rGREAT: an R/bioconductor package for functional enrichment on genomic regions
Abstract Summary GREAT (Genomic Regions Enrichment of Annotations Tool) is a widely
used tool for functional enrichment on genomic regions. However, as an online tool, it has …
used tool for functional enrichment on genomic regions. However, as an online tool, it has …
Identifying the causes and consequences of assembly gaps using a multiplatform genome assembly of a bird‐of‐paradise
Genome assemblies are currently being produced at an impressive rate by consortia and
individual laboratories. The low costs and increasing efficiency of sequencing technologies …
individual laboratories. The low costs and increasing efficiency of sequencing technologies …
The changing face of genome assemblies: Guidance on achieving high‐quality reference genomes
The quality of genome assemblies has improved rapidly in recent years due to continual
advances in sequencing technology, assembly approaches, and quality control. In the field …
advances in sequencing technology, assembly approaches, and quality control. In the field …
An improved de novo genome assembly of the common marmoset genome yields improved contiguity and increased map** rates of sequence data
Abstract Background The common marmoset (Callithrix jacchus) is one of the most studied
primate model organisms. However, the marmoset genomes available in the public …
primate model organisms. However, the marmoset genomes available in the public …
Fast Context-Aware Analysis of Genome Annotation Colocalization
An annotation is a set of genomic intervals sharing a particular function or property.
Examples include genes or their exons, sequence repeats, regions with a particular …
Examples include genes or their exons, sequence repeats, regions with a particular …
Exploiting whole-genome sequencing to understand the evolution of corals and their symbionts
J Zhang - 2023 - researchonline.jcu.edu.au
Jia Zhang's research undertook an in-depth study of Acropora coral population genomics
using whole-genome sequencing data. Her focus was the genetic diversity and evolution of …
using whole-genome sequencing data. Her focus was the genetic diversity and evolution of …
Figbird: a probabilistic method for filling gaps in genome assemblies
Motivation Advances in sequencing technologies have led to the sequencing of genomes of
a multitude of organisms. However, draft genomes of many of these organisms contain a …
a multitude of organisms. However, draft genomes of many of these organisms contain a …
Efficient Analysis of Annotation Colocalization Accounting for Genomic Contexts
An annotation is a set of genomic intervals sharing a particular function or property.
Examples include genes, conserved elements, and epigenetic modifications. A common …
Examples include genes, conserved elements, and epigenetic modifications. A common …
[KNJIGA][B] Towards single-cell chromosome-specific single-base measurement of telomeres with nanopores
N Luong - 2022 - search.proquest.com
Telomeres protect the ends of chromosomes from DNA repair processes. Somatic cells
reach senescence as a protective mechanism when telomeres have become critically short …
reach senescence as a protective mechanism when telomeres have become critically short …
Probabilistic method for filling gaps in genome assemblies
S Tarafder - 2022 - lib.buet.ac.bd
Advances in sequencing technologies have led to sequencing of genomes of a multitude of
organisms. However, draft genomes of many of these organisms contain a large number of …
organisms. However, draft genomes of many of these organisms contain a large number of …