Artificial Intelligence Methods and Models for Retro-Biosynthesis: A Sco** Review

G Gricourt, P Meyer, T Duigou, JL Faulon - ACS Synthetic Biology, 2024 - ACS Publications
Retrosynthesis aims to efficiently plan the synthesis of desirable chemicals by strategically
breaking down molecules into readily available building block compounds. Having a long …

Retrosynthetic reaction pathway prediction through neural machine translation of atomic environments

UV Ucak, I Ashyrmamatov, J Ko, J Lee - Nature communications, 2022 - nature.com
Designing efficient synthetic routes for a target molecule remains a major challenge in
organic synthesis. Atom environments are ideal, stand-alone, chemically meaningful …

Improving the quality of chemical language model outcomes with atom-in-SMILES tokenization

UV Ucak, I Ashyrmamatov, J Lee - Journal of cheminformatics, 2023 - Springer
Tokenization is an important preprocessing step in natural language processing that may
have a significant influence on prediction quality. This research showed that the traditional …

[HTML][HTML] Machine learning-assisted retrosynthesis planning: current status and future prospects

Y Wei, L Shan, T Qiu, D Lu, Z Liu - Chinese Journal of Chemical …, 2024 - Elsevier
Abstract Machine learning-assisted retrosynthesis planning aims to utilize machine learning
(ML) algorithms to find synthetic pathways for target compounds. In recent years, with the …

Weighted Averaging Scheme and Local Atomic Descriptor for pKa Prediction Based on Density Functional Theory

HS Yu, MA Watson, AD Bochevarov - Journal of Chemical …, 2018 - ACS Publications
As a continuation of our work on develo** a density functional theory-based p K a
predictor, we present conceptual improvements to our previously published shell model …

Stereo-aware extension of HOSE codes

S Kuhn, SR Johnson - ACS omega, 2019 - ACS Publications
Descriptions of molecular environments have many applications in chemoinformatics,
including chemical shift prediction. Hierarchically ordered spherical environment (HOSE) …

Synthesize in a Smart Way: A Brief Introduction to Intelligence and Automation in Organic Synthesis

DZ Lin, G Fang, K Liao - Machine Learning in Molecular Sciences, 2023 - Springer
In this chapter, we will give a brief introduction to intelligence and automation in organic
synthesis. The chapter includes five main sections. In the first section, selected examples of …

[PDF][PDF] Application of artificial intelligence and machine learning methods in drug discovery and development

C Naranjo-Castañeda, CA Coello-Coello, E Juaristia - Arkivoc, 2024 - arkat-usa.org
It is clear that the COVID-19 pandemic has brought renewed attention to the urgent need for
the development of efficient strategies for drug discovery and development. In particular …

Data curation

G Marcou, A Varnek - Tutorials in chemoinformatics, 2017 - Wiley Online Library
This chapter includes a tutorial exploring data curation. The tutorial is divided into two
sections devoted to theoretical background, and software applications, respectively, with the …

Investigating the Emergence of Chemical Complexity for Life Detection and Patent Evolution; and Develo** Earth Science Curricula for Prison Education

JF Malloy - 2023 - search.proquest.com
The origin of life remains unknowable to current science. Scientists cannot see into the
origin of life on Earth, and until humanity discovers life elsewhere in the universe and begin …