Machine learning applications for mass spectrometry-based metabolomics
The metabolome of an organism depends on environmental factors and intracellular
regulation and provides information about the physiological conditions. Metabolomics helps …
regulation and provides information about the physiological conditions. Metabolomics helps …
Machine and deep learning meet genome-scale metabolic modeling
Omic data analysis is steadily growing as a driver of basic and applied molecular biology
research. Core to the interpretation of complex and heterogeneous biological phenotypes …
research. Core to the interpretation of complex and heterogeneous biological phenotypes …
Systems biology and multi-omics integration: viewpoints from the metabolomics research community
The use of multiple omics techniques (ie, genomics, transcriptomics, proteomics, and
metabolomics) is becoming increasingly popular in all facets of life science. Omics …
metabolomics) is becoming increasingly popular in all facets of life science. Omics …
[HTML][HTML] A machine learning approach to predict metabolic pathway dynamics from time-series multiomics data
New synthetic biology capabilities hold the promise of dramatically improving our ability to
engineer biological systems. However, a fundamental hurdle in realizing this potential is our …
engineer biological systems. However, a fundamental hurdle in realizing this potential is our …
Systems biology of metabolism
J Nielsen - Annual review of biochemistry, 2017 - annualreviews.org
Metabolism is highly complex and involves thousands of different connected reactions; it is
therefore necessary to use mathematical models for holistic studies. The use of …
therefore necessary to use mathematical models for holistic studies. The use of …
Barriers and opportunities in bio-based production of hydrocarbons
Global climate change caused by the accumulation of greenhouse gases (GHGs) has
caused concerns regarding the continued reliance on fossil fuels as our primary energy …
caused concerns regarding the continued reliance on fossil fuels as our primary energy …
Microbial production of limonene and its derivatives: Achievements and perspectives
Y Ren, S Liu, G **, X Yang, YJ Zhou - Biotechnology Advances, 2020 - Elsevier
Limonene and its derivatives have great market potential with diverse applications in food,
pharmaceuticals, cosmetics, etc. Commercial production of limonene and its derivatives …
pharmaceuticals, cosmetics, etc. Commercial production of limonene and its derivatives …
Engineering biological systems using automated biofoundries
Engineered biological systems such as genetic circuits and microbial cell factories have
promised to solve many challenges in the modern society. However, the artisanal processes …
promised to solve many challenges in the modern society. However, the artisanal processes …
[HTML][HTML] Systems biology approaches integrated with artificial intelligence for optimized metabolic engineering
Metabolic engineering aims to maximize the production of bio-economically important
substances (compounds, enzymes, or other proteins) through the optimization of the …
substances (compounds, enzymes, or other proteins) through the optimization of the …
Integrated analysis of isopentenyl pyrophosphate (IPP) toxicity in isoprenoid-producing Escherichia coli
Isopentenyl pyrophosphate (IPP) toxicity presents a challenge in engineered microbial
systems since its formation is unavoidable in terpene biosynthesis. In this work, we develop …
systems since its formation is unavoidable in terpene biosynthesis. In this work, we develop …