Crystal nucleation in liquids: Open questions and future challenges in molecular dynamics simulations

GC Sosso, J Chen, SJ Cox, M Fitzner… - Chemical …, 2016 - ACS Publications
The nucleation of crystals in liquids is one of nature's most ubiquitous phenomena, playing
an important role in areas such as climate change and the production of drugs. As the early …

100 years of the Lennard-Jones potential

P Schwerdtfeger, DJ Wales - Journal of Chemical Theory and …, 2024 - ACS Publications
It is now 100 years since Lennard-Jones published his first paper introducing the now
famous potential that bears his name. It is therefore timely to reflect on the many …

Machine-guided path sampling to discover mechanisms of molecular self-organization

H Jung, R Covino, A Arjun, C Leitold… - Nature Computational …, 2023 - nature.com
Molecular self-organization driven by concerted many-body interactions produces the
ordered structures that define both inanimate and living matter. Here we present an …

Water transport in polymer electrolyte membrane fuel cells

K Jiao, X Li - Progress in energy and combustion Science, 2011 - Elsevier
Polymer electrolyte membrane fuel cell (PEMFC) has been recognized as a promising zero-
emission power source for portable, mobile and stationary applications. To simultaneously …

CHARMM: the biomolecular simulation program

BR Brooks, CL Brooks III… - Journal of …, 2009 - Wiley Online Library
Abstract CHARMM (Chemistry at HARvard Molecular Mechanics) is a highly versatile and
widely used molecular simulation program. It has been developed over the last three …

QM/MM methods for biomolecular systems

HM Senn, W Thiel - Angewandte Chemie International Edition, 2009 - Wiley Online Library
Two are better than one: Quantum mechanics/molecular mechanics (QM/MM) methods are
the state‐of‐the‐art computational technique for treating reactive and other “electronic” …

[KNJIGA][B] Monte Carlo simulation in statistical physics

K Binder, DW Heermann, K Binder - 1992 - Springer
Roughly at the time (1987) when the manuscript for the first three chapters of the present
book was completed, several breakthroughs occurred. They had a profound influence on the …

TRANSITION PATH SAMPLING: Throwing Ropes Over Rough Mountain Passes, in the Dark

PG Bolhuis, D Chandler, C Dellago… - Annual review of …, 2002 - annualreviews.org
▪ Abstract This article reviews the concepts and methods of transition path sampling. These
methods allow computational studies of rare events without requiring prior knowledge of …

Energy landscapes

DJ Wales - Atomic clusters and nanoparticles. Agregats atomiques …, 2002 - Springer
This overview of energy landscapes will focus on some rigorous properties of potential
energy surfaces (PES's), especially the symmetry properties of steepest-descent paths, and …

[KNJIGA][B] Principles of multiscale modeling

E Weinan - 2011 - books.google.com
" Physical phenomena can be modeled at varying degrees of complexity and at different
scales. Multiscale modeling provides a framework, based on fundamental principles, for …