[BOOK][B] Computational topology for data analysis

TK Dey, Y Wang - 2022 - books.google.com
" In this chapter, we introduce some of the very basics that are used throughout the book.
First, we give the definition of a topological space and related notions of open and closed …

Persistent Laplacians: Properties, algorithms and implications

F Mémoli, Z Wan, Y Wang - SIAM Journal on Mathematics of Data Science, 2022 - SIAM
We present a thorough study of the theoretical properties and devise efficient algorithms for
the persistent Laplacian, an extension of the standard combinatorial Laplacian to the setting …

[HTML][HTML] Topological analysis of data

A Patania, F Vaccarino, G Petri - EPJ Data Science, 2017 - Springer
Propelled by a fast evolving landscape of techniques and datasets, data science is growing
rapidly. Against this background, topological data analysis (TDA) has carved itself a niche …

Dist2cycle: A simplicial neural network for homology localization

AD Keros, V Nanda, K Subr - Proceedings of the AAAI Conference on …, 2022 - ojs.aaai.org
Simplicial complexes can be viewed as high dimensional generalizations of graphs that
explicitly encode multi-way ordered relations between vertices at different resolutions, all at …

Computing topological persistence for simplicial maps

TK Dey, F Fan, Y Wang - Proceedings of the thirtieth annual symposium …, 2014 - dl.acm.org
Algorithms for persistent homology are well-studied where homomorphisms are induced by
inclusion maps. In this paper, we propose a practical algorithm for computing persistence …

Cycle representation learning for inductive relation prediction

Z Yan, T Ma, L Gao, Z Tang… - … Conference on Machine …, 2022 - proceedings.mlr.press
In recent years, algebraic topology and its modern development, the theory of persistent
homology, has shown great potential in graph representation learning. In this paper, based …

An efficient computation of handle and tunnel loops via Reeb graphs

TK Dey, F Fan, Y Wang - ACM Transactions on Graphics (TOG), 2013 - dl.acm.org
A special family of non-trivial loops on a surface called handle and tunnel loops associates
closely to geometric features of" handles" and" tunnels" respectively in a 3D model. The …

Optimal topological cycles and their application in cardiac trabeculae restoration

P Wu, C Chen, Y Wang, S Zhang, C Yuan… - … Processing in Medical …, 2017 - Springer
In cardiac image analysis, it is important yet challenging to reconstruct the trabeculae,
namely, fine muscle columns whose ends are attached to the ventricular walls. To extract …

Resting-state fMRI functional connectivity: Big data preprocessing pipelines and topological data analysis

A Phinyomark, E Ibanez-Marcelo… - IEEE Transactions on …, 2017 - ieeexplore.ieee.org
Resting state functional magnetic resonance imaging (rfMRI) can be used to measure
functional connectivity and then identify brain networks and related brain disorders and …

The compressed annotation matrix: An efficient data structure for computing persistent cohomology

JD Boissonnat, TK Dey, C Maria - European Symposium on Algorithms, 2013 - Springer
Persistent homology with coefficients in a field F coincides with the same for cohomology
because of duality. We propose an implementation of a recently introduced algorithm for …