Pillars of biology: Boolean modeling of gene-regulatory networks

J Thakar - Journal of Theoretical Biology, 2024 - Elsevier
Boolean modeling is a mathematical modeling framework used for defining and studying
gene-regulatory networks (GRNs). It serves as a means to develop mechanistic models …

Statistical physics of liquid brains

J Piñero, R Solé - … Transactions of the Royal Society B, 2019 - royalsocietypublishing.org
Liquid neural networks (or 'liquid brains') are a widespread class of cognitive living networks
characterized by a common feature: the agents (ants or immune cells, for example) move in …

Subcritical escape waves in schooling fish

W Poel, BC Daniels, MMG Sosna, CR Twomey… - Science …, 2022 - science.org
Theoretical physics predicts optimal information processing in living systems near transitions
(or pseudo-critical points) in their collective dynamics. However, focusing on potential …

Scale-free correlations and potential criticality in weakly ordered populations of brain cancer cells

KB Wood, A Comba, S Motsch, TS Grigera… - Science …, 2023 - science.org
Collective behavior spans several orders of magnitude of biological organization, from cell
colonies to flocks of birds. We used time-resolved tracking of individual glioblastoma cells to …

What is consciousness? Artificial intelligence, real intelligence, quantum mind and qualia

SA Kauffman, A Roli - Biological Journal of the Linnean Society, 2023 - academic.oup.com
We approach the question 'What is consciousness?'in a new way, not as
Descartes''systematic doubt', but as how organisms find their way in their world. Finding …

The basis of easy controllability in Boolean networks

E Borriello, BC Daniels - Nature communications, 2021 - nature.com
Effective control of biological systems can often be achieved through the control of a
surprisingly small number of distinct variables. We bring clarity to such results using the …

Exploring the criticality hypothesis using programmable swarm robots with Vicsek-like interactions

X Lei, Y **ang, M Duan, X Peng - Journal of the Royal …, 2023 - royalsocietypublishing.org
A widely mentioned but not experimentally confirmed view (known as the 'criticality
hypothesis') argues that biological swarm systems gain optimal responsiveness to …

Collective predator evasion: Putting the criticality hypothesis to the test

PP Klamser, P Romanczuk - PLoS computational biology, 2021 - journals.plos.org
According to the criticality hypothesis, collective biological systems should operate in a
special parameter region, close to so-called critical points, where the collective behavior …

Models of cell processes are far from the edge of chaos

KH Park, FX Costa, LM Rocha, R Albert, JC Rozum - PRX life, 2023 - APS
Complex living systems are thought to exist at the “edge of chaos” separating the ordered
dynamics of robust function from the disordered dynamics of rapid environmental …

On the criticality of adaptive Boolean network robots

M Braccini, A Roli, E Barbieri, SA Kauffman - Entropy, 2022 - mdpi.com
Systems poised at a dynamical critical regime, between order and disorder, have been
shown capable of exhibiting complex dynamics that balance robustness to external …