Welcoming more participation in open data science for the oceans

AL Fredston, JSS Lowndes - Annual Review of Marine Science, 2024 - annualreviews.org
Open science is a global movement happening across all research fields. Enabled by
technology and the open web, it builds on years of efforts by individuals, grassroots …

A how-to guide for code sharing in biology

RJ Abdill, E Talarico, L Grieneisen - PLoS biology, 2024 - journals.plos.org
In 2024, all biology is computational biology. Computer-aided analysis continues to spread
into new fields, becoming more accessible to researchers trained in the wet lab who are …

Implementing code review in the scientific workflow: Insights from ecology and evolutionary biology

ER Ivimey‐Cook, JL Pick… - Journal of …, 2023 - academic.oup.com
Code review increases reliability and improves reproducibility of research. As such, code
review is an inevitable step in software development and is common in fields such as …

A roadmap for biomonitoring in the 21st century: merging methods into metrics via ecological networks

JP Cuff, MD Suresh, MEG Dopson… - Advances in ecological …, 2023 - Elsevier
The urgent need for highly resolved and broad biomonitoring has never been greater as
challenges such as climate change, agricultural intensification and biodiversity loss …

Automatic detection for bioacoustic research: a practical guide from and for biologists and computer scientists

A Kershenbaum, Ç Akçay, L Babu‐Saheer… - Biological …, 2024 - Wiley Online Library
Recent years have seen a dramatic rise in the use of passive acoustic monitoring (PAM) for
biological and ecological applications, and a corresponding increase in the volume of data …

The case for open research in entomology: Reducing harm, refining reproducibility and advancing insect science

JP Cuff, M Barrett, H Gray, C Fox… - Agricultural and Forest …, 2024 - Wiley Online Library
Open research is an increasingly developed and crucial framework for the advancement of
science and has seen successful adoption across a broad range of disciplines. Entomology …

[HTML][HTML] Beyond guides, protocols and acronyms: Adoption of good modelling practices depends on challenging academia's status quo in ecology

T Micheletti, MC Wimmler, U Berger, V Grimm… - Ecological …, 2024 - Elsevier
Implementing good modelling practices (GMP) in ecological sciences is key to improving
scientific reliability. Despite the increased availability of guidelines and protocols detailing …

“Paper, Meet Code”: A Deep Learning Approach to Linking Scholarly Articles with GitHub Repositories

P Puangjaktha, M Choetkiertikul, S Tuarob - IEEE Access, 2024 - ieeexplore.ieee.org
Computer scientists often publish their source code accompanying their publications,
prominently using code repositories across various domains. Despite the concurrent …

How will we prepare for an uncertain future? The value of open data and code for unborn generations facing climate change

DGE Gomes - Proceedings B, 2025 - royalsocietypublishing.org
As the impacts of climate change continue to intensify, humans face new challenges to long-
term survival. Humans will likely be battling these problems long after 2100, when many …

Computationally reproducing results from meta-analyses in Ecology and Evolutionary Biology using shared code and data

S Kambouris, DP Wilkinson, ET Smith, F Fidler - Plos one, 2024 - journals.plos.org
Many journals in ecology and evolutionary biology encourage or require authors to make
their data and code available alongside articles. In this study we investigated how often this …