ANEW APPROACH TO DECODING LIFE: Systems Biology

T Ideker, T Galitski, L Hood - Annual review of genomics and …, 2001 - annualreviews.org
▪ Abstract Systems biology studies biological systems by systematically perturbing them
(biologically, genetically, or chemically); monitoring the gene, protein, and informational …

The internal structure of mitochondria

TG Frey, CA Mannella - Trends in biochemical sciences, 2000 - cell.com
Electron microscopic (EM) tomography is providing important new insights into the internal
organization of mitochondria. The standard baffle model for cristae structure, called into …

A spatial model of YAP/TAZ signaling reveals how stiffness, dimensionality, and shape contribute to emergent outcomes

KE Scott, SI Fraley… - Proceedings of the …, 2021 - National Acad Sciences
YAP/TAZ is a master regulator of mechanotransduction whose functions rely on
translocation from the cytoplasm to the nucleus in response to diverse physical cues …

Computational modelling of the receptor-tyrosine-kinase-activated MAPK pathway

RJ Orton, OE Sturm, V Vyshemirsky… - Biochemical …, 2005 - portlandpress.com
The MAPK (mitogen-activated protein kinase) pathway is one of the most important and
intensively studied signalling pathways. It is at the heart of a molecular-signalling network …

[HTML][HTML] Structure of a B12-dependent radical SAM enzyme in carbapenem biosynthesis

HL Knox, EK Sinner, CA Townsend, AK Boal… - Nature, 2022 - nature.com
Carbapenems are antibiotics of last resort in the clinic. Owing to their potency and broad-
spectrum activity, they are an important part of the antibiotic arsenal. The vital role of …

An integrated biomarker-based strategy for ecotoxicological evaluation of risk in environmental management

MN Moore, MH Depledge, JW Readman… - Mutation Research …, 2004 - Elsevier
Environmental impacts by both natural events and man-made interventions are a fact of life;
and develo** the capacity to minimise these impacts and their harmful consequences for …

The Virtual Cell: a software environment for computational cell biology

LM Loew, JC Schaff - TRENDS in Biotechnology, 2001 - cell.com
The newly emerging field of computational cell biology requires software tools that address
the needs of a broad community of scientists. Cell biological processes are controlled by an …

[HTML][HTML] Dynamics of Cdc42 network embodies a Turing-type mechanism of yeast cell polarity

AB Goryachev, AV Pokhilko - FEBS letters, 2008 - Elsevier
Complex biochemical networks can be understood by identifying their principal regulatory
motifs and mode of action. We model the early phase of budding yeast cellular polarization …

Whole-cell simulation: a grand challenge of the 21st century

M Tomita - TRENDS in Biotechnology, 2001 - cell.com
Study of the cell will never be complete unless its dynamic behavior is understood. The
complex behavior of the cell cannot be determined or predicted unless a computer model of …

[HTML][HTML] The relevance of mitochondrial membrane topology to mitochondrial function

CA Mannella - Biochimica et Biophysica Acta (BBA)-Molecular Basis …, 2006 - Elsevier
This review summarizes recent findings from electron tomography about the three-
dimensional shape of mitochondrial membranes and its possible influence on a range of …