50+ years of eukaryotic transcription: an expanding universe of factors and mechanisms

RG Roeder - Nature structural & molecular biology, 2019 - nature.com
The landmark 1969 discovery of nuclear RNA polymerases I, II and III in diverse eukaryotes
represented a major turning point in the field that, with subsequent elucidation of the distinct …

Histone acylations and chromatin dynamics: concepts, challenges, and links to metabolism

S Nitsch, L Zorro Shahidian, R Schneider - EMBO reports, 2021 - embopress.org
In eukaryotic cells, DNA is tightly packed with the help of histone proteins into chromatin.
Chromatin architecture can be modified by various post‐translational modifications of …

A genomic sequencing protocol that yields a positive display of 5-methylcytosine residues in individual DNA strands.

M Frommer, LE McDonald, DS Millar… - Proceedings of the …, 1992 - National Acad Sciences
The modulation of DNA-protein interactions by methylation of protein-binding sites in DNA
and the occurrence in genomic imprinting, X chromosome inactivation, and fragile X …

The RNA polymerase II core promoter

ST Smale, JT Kadonaga - Annual review of biochemistry, 2003 - annualreviews.org
▪ Abstract The events leading to transcription of eukaryotic protein-coding genes culminate
in the positioning of RNA polymerase II at the correct initiation site. The core promoter, which …

Tunable and multifunctional eukaryotic transcription factors based on CRISPR/Cas

F Farzadfard, SD Perli, TK Lu - ACS synthetic biology, 2013 - ACS Publications
Transcriptional regulation is central to the complex behavior of natural biological systems
and synthetic gene circuits. Platforms for the scalable, tunable, and simple modulation of …

The general transcription machinery and general cofactors

MC Thomas, CM Chiang - Critical reviews in biochemistry and …, 2006 - Taylor & Francis
In eukaryotes, the core promoter serves as a platform for the assembly of transcription
preinitiation complex (PIC) that includes TFIIA, TFIIB, TFIID, TFIIE, TFIIF, TFIIH, and RNA …

Transcriptional repression by YY1, a human GLI-Krüippel-related protein, and relief of repression by adenovirus E1A protein

Y Shi, E Seto, LS Chang, T Shenk - Cell, 1991 - cell.com
A sequence within the transcription control region of the adeno-associated virus P5
promoter has been shown to mediate transcriptional activation by the adenovirus EIA …

Cytosine methylation prevents binding to DNA of a HeLa cell transcription factor required for optimal expression of the adenovirus major late promoter.

F Watt, PL Molloy - Genes & development, 1988 - genesdev.cshlp.org
Cytosine methylation within CpG dinucleotides has been implicated in the regulation of
gene expression in vertebrates and, in some cases, has been shown to be causative in …

Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences

P Bucher - Journal of molecular biology, 1990 - Elsevier
Optimized weight matrices defining four major eukaryotic promoter elements, the TATA-box,
cap signal, CCAAT-, and GC-box, are presented; they were derived by comparative …

TFIIH: when transcription met DNA repair

E Compe, JM Egly - Nature reviews Molecular cell biology, 2012 - nature.com
The transcription initiation factor TFIIH is a remarkable protein complex that has a
fundamental role in the transcription of protein-coding genes as well as during the DNA …