Phylogenetic networks are used to represent evolutionary scenarios in biology and
linguistics. To find the most probable scenario, it may be necessary to compare candidate …

Phylogenetic networks are increasingly being considered better suited to represent the
complexity of the evolutionary relationships between species. One class of phylogenetic …

Background Phylogenetic networks are mathematical models of evolutionary processes
involving reticulate events such as hybridization, recombination, or horizontal gene transfer …

In phylogenetic networks, picking a cherry consists of removing a leaf that shares a parent
with another leaf, or removing a reticulate edge whose endpoints are parents of leaves …

PhyloX is a Python package with tools for generating, manipulating, and analysing
phylogenetic networks. It uses the NetworkX package (Hagberg et al., 2008) for basic graph …

Tree Containment is a fundamental problem in phylogenetics useful for verifying a proposed
phylogenetic network, representing the evolutionary history of certain species. Tree …

A binary phylogenetic network on a taxon set $ X $ is a rooted acyclic digraph in which the
degree of each nonleaf node is three and its leaves (ie degree-one nodes) are uniquely …

Phylogenetic networks are increasingly being considered as better suited to represent the
complexity of the evolutionary relationships between species. One class of phylogenetic …

In phylogenetic networks, picking a cherry consists of removing a leaf that shares a parent
with another leaf, or removing a reticulate edge whose endpoints are parents of leaves …

We address the problem of inferring an optimal tree displayed by a network, given a gene
tree G and a tree-child network N, under the deep coalescence cost. We propose an O (| G …