[HTML][HTML] Protein subcellular localization prediction tools

M Gillani, G Pollastri - Computational and Structural Biotechnology Journal, 2024 - Elsevier
Protein subcellular localization prediction is of great significance in bioinformatics and
biological research. Most of the proteins do not have experimentally determined localization …

Detecting sequence signals in targeting peptides using deep learning

JJA Armenteros, M Salvatore… - Life science …, 2019 - life-science-alliance.org
In bioinformatics, machine learning methods have been used to predict features embedded
in the sequences. In contrast to what is generally assumed, machine learning approaches …

Subcellular fractionation methods and strategies for proteomics

YH Lee, HT Tan, MCM Chung - Proteomics, 2010 - Wiley Online Library
Developments in subcellular fractionation strategies have provided the means to profile and
analyze the protein composition of organelles and cellular structures by proteomics. Here …

Chromerid genomes reveal the evolutionary path from photosynthetic algae to obligate intracellular parasites

YH Woo, H Ansari, TD Otto, CM Klinger, M Kolisko… - elife, 2015 - elifesciences.org
The eukaryotic phylum Apicomplexa encompasses thousands of obligate intracellular
parasites of humans and animals with immense socio-economic and health impacts. We …

YLoc—an interpretable web server for predicting subcellular localization

S Briesemeister, J Rahnenfï¿ ½hrer… - Nucleic acids …, 2010 - academic.oup.com
Predicting subcellular localization has become a valuable alternative to time-consuming
experimental methods. Major drawbacks of many of these predictors is their lack of …

SUBA3: a database for integrating experimentation and prediction to define the SUB cellular location of proteins in A rabidopsis

SK Tanz, I Castleden, CM Hooper… - Nucleic acids …, 2012 - academic.oup.com
The subcellular location database for Arabidopsis proteins (SUBA3, http://suba. plantenergy.
uwa. edu. au) combines manual literature curation of large-scale subcellular proteomics …

Heavy metal‐associated isoprenylated plant protein (HIPP): characterization of a family of proteins exclusive to plants

JB de Abreu‐Neto, AC Turchetto‐Zolet… - The FEBS …, 2013 - Wiley Online Library
Metallochaperones are key proteins for the safe transport of metallic ions inside the cell.
HIPP s (heavy metal‐associated isoprenylated plant proteins) are metallochaperones that …

MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction

T Blum, S Briesemeister, O Kohlbacher - BMC bioinformatics, 2009 - Springer
Background Knowledge of subcellular localization of proteins is crucial to proteomics, drug
target discovery and systems biology since localization and biological function are highly …

Pyrenoid proteomics reveals independent evolution of the CO2-concentrating organelle in chlorarachniophytes

R Moromizato, K Fukuda, S Suzuki, T Motomura… - Proceedings of the …, 2024 - pnas.org
Pyrenoids are microcompartments that are universally found in the photosynthetic plastids of
various eukaryotic algae. They contain ribulose-1, 5-bisphosphate carboxylase/oxygenase …

SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome

CM Hooper, SK Tanz, IR Castleden, MA Vacher… - …, 2014 - academic.oup.com
Motivation: Knowing the subcellular location of proteins is critical for understanding their
function and develo** accurate networks representing eukaryotic biological processes …