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Ancestral reconstruction and the evolution of protein energy landscapes
LO Chisholm, KN Orlandi, SR Phillips… - Annual Review of …, 2023 - annualreviews.org
A protein's sequence determines its conformational energy landscape. This, in turn,
determines the protein's function. Understanding the evolution of new protein functions …
determines the protein's function. Understanding the evolution of new protein functions …
Reconstructing early microbial life
B Kaçar - Annual Review of Microbiology, 2024 - annualreviews.org
For more than 3.5 billion years, life experienced dramatic environmental extremes on Earth.
These include shifts from oxygen-less to overoxygenated atmospheres and cycling between …
These include shifts from oxygen-less to overoxygenated atmospheres and cycling between …
Diversity and evolution of frog visual opsins: spectral tuning and adaptation to distinct light environments
Visual systems adapt to different light environments through several avenues including
optical changes to the eye and neurological changes in how light signals are processed and …
optical changes to the eye and neurological changes in how light signals are processed and …
Opsin gene duplication in Lepidoptera: retrotransposition, sex linkage, and gene expression
Color vision in insects is determined by signaling cascades, central to which are opsin
proteins, resulting in sensitivity to light at different wavelengths. In certain insect groups …
proteins, resulting in sensitivity to light at different wavelengths. In certain insect groups …
Molluscan genomes reveal extensive differences in photopigment evolution across the phylum
In animals, opsins and cryptochromes are major protein families that transduce light signals
when bound to light-absorbing chromophores. Opsins are involved in various light …
when bound to light-absorbing chromophores. Opsins are involved in various light …
Ancient whale rhodopsin reconstructs dim-light vision over a major evolutionary transition: implications for ancestral diving behavior
Cetaceans are fully aquatic mammals that descended from terrestrial ancestors, an iconic
evolutionary transition characterized by adaptations for underwater foraging via breath-hold …
evolutionary transition characterized by adaptations for underwater foraging via breath-hold …
Diversity and molecular evolution of nonvisual opsin genes across environmental, developmental, and morphological adaptations in frogs
Nonvisual opsins are transmembrane proteins expressed in the eyes and other tissues of
many animals. When paired with a light-sensitive chromophore, nonvisual opsins form …
many animals. When paired with a light-sensitive chromophore, nonvisual opsins form …
Discovering genotype–phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)
SA Frazer, M Baghbanzadeh, A Rahnavard… - …, 2024 - academic.oup.com
Background Predicting phenotypes from genetic variation is foundational for fields as
diverse as bioengineering and global change biology, highlighting the importance of …
diverse as bioengineering and global change biology, highlighting the importance of …
Adaptation of antarctic icefish vision to extreme environments
GM Castiglione, FE Hauser… - Molecular Biology …, 2023 - academic.oup.com
Extreme environments, such as Antarctic habitats, present major challenges for many
biological processes. Antarctic icefishes (Crynotothenioidea) represent a compelling system …
biological processes. Antarctic icefishes (Crynotothenioidea) represent a compelling system …
Convergent phenotypic evolution of rhodopsin for dim-light sensing across deep-diving vertebrates
Y **a, Y Cui, A Wang, F Liu, H Chi… - Molecular Biology …, 2021 - academic.oup.com
Rhodopsin comprises an opsin attached to a retinal chromophore and is the only visual
pigment conferring dim-light vision in vertebrates. On activation by photons, the retinal group …
pigment conferring dim-light vision in vertebrates. On activation by photons, the retinal group …