Ancestral reconstruction and the evolution of protein energy landscapes

LO Chisholm, KN Orlandi, SR Phillips… - Annual Review of …, 2023 - annualreviews.org
A protein's sequence determines its conformational energy landscape. This, in turn,
determines the protein's function. Understanding the evolution of new protein functions …

Reconstructing early microbial life

B Kaçar - Annual Review of Microbiology, 2024 - annualreviews.org
For more than 3.5 billion years, life experienced dramatic environmental extremes on Earth.
These include shifts from oxygen-less to overoxygenated atmospheres and cycling between …

Diversity and evolution of frog visual opsins: spectral tuning and adaptation to distinct light environments

RK Schott, MK Fujita, JW Streicher… - Molecular biology …, 2024 - academic.oup.com
Visual systems adapt to different light environments through several avenues including
optical changes to the eye and neurological changes in how light signals are processed and …

Opsin gene duplication in Lepidoptera: retrotransposition, sex linkage, and gene expression

PO Mulhair, L Crowley, DH Boyes… - Molecular Biology …, 2023 - academic.oup.com
Color vision in insects is determined by signaling cascades, central to which are opsin
proteins, resulting in sensitivity to light at different wavelengths. In certain insect groups …

Molluscan genomes reveal extensive differences in photopigment evolution across the phylum

KE McElroy, JA Audino, JM Serb - Molecular Biology and …, 2023 - academic.oup.com
In animals, opsins and cryptochromes are major protein families that transduce light signals
when bound to light-absorbing chromophores. Opsins are involved in various light …

Ancient whale rhodopsin reconstructs dim-light vision over a major evolutionary transition: implications for ancestral diving behavior

SZ Dungan, BSW Chang - Proceedings of the National Academy of …, 2022 - pnas.org
Cetaceans are fully aquatic mammals that descended from terrestrial ancestors, an iconic
evolutionary transition characterized by adaptations for underwater foraging via breath-hold …

Diversity and molecular evolution of nonvisual opsin genes across environmental, developmental, and morphological adaptations in frogs

JL Boyette, RC Bell, MK Fujita… - Molecular Biology …, 2024 - academic.oup.com
Nonvisual opsins are transmembrane proteins expressed in the eyes and other tissues of
many animals. When paired with a light-sensitive chromophore, nonvisual opsins form …

Discovering genotype–phenotype relationships with machine learning and the Visual Physiology Opsin Database (VPOD)

SA Frazer, M Baghbanzadeh, A Rahnavard… - …, 2024 - academic.oup.com
Background Predicting phenotypes from genetic variation is foundational for fields as
diverse as bioengineering and global change biology, highlighting the importance of …

Adaptation of antarctic icefish vision to extreme environments

GM Castiglione, FE Hauser… - Molecular Biology …, 2023 - academic.oup.com
Extreme environments, such as Antarctic habitats, present major challenges for many
biological processes. Antarctic icefishes (Crynotothenioidea) represent a compelling system …

Convergent phenotypic evolution of rhodopsin for dim-light sensing across deep-diving vertebrates

Y **a, Y Cui, A Wang, F Liu, H Chi… - Molecular Biology …, 2021 - academic.oup.com
Rhodopsin comprises an opsin attached to a retinal chromophore and is the only visual
pigment conferring dim-light vision in vertebrates. On activation by photons, the retinal group …