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Missing heritability and strategies for finding the underlying causes of complex disease
Although recent genome-wide studies have provided valuable insights into the genetic basis
of human disease, they have explained relatively little of the heritability of most complex …
of human disease, they have explained relatively little of the heritability of most complex …
Travelling the world of gene–gene interactions
K Van Steen - Briefings in bioinformatics, 2012 - academic.oup.com
Over the last few years, main effect genetic association analysis has proven to be a
successful tool to unravel genetic risk components to a variety of complex diseases. In the …
successful tool to unravel genetic risk components to a variety of complex diseases. In the …
Negative epistasis between beneficial mutations in an evolving bacterial population
Epistatic interactions between mutations play a prominent role in evolutionary theories.
Many studies have found that epistasis is widespread, but they have rarely considered …
Many studies have found that epistasis is widespread, but they have rarely considered …
Non-additive microbial community responses to environmental complexity
Environmental composition is a major, though poorly understood, determinant of
microbiome dynamics. Here we ask whether general principles govern how microbial …
microbiome dynamics. Here we ask whether general principles govern how microbial …
Resolving discrepancies between chimeric and multiplicative measures of higher-order epistasis
Epistasis-the interaction between alleles at different genetic loci-plays a fundamental role in
biology. However, several recent approaches quantify epistasis using a chimeric formula …
biology. However, several recent approaches quantify epistasis using a chimeric formula …
Knowledge-driven analysis identifies a gene–gene interaction affecting high-density lipoprotein cholesterol levels in multi-ethnic populations
Total cholesterol, low-density lipoprotein cholesterol, triglyceride, and high-density
lipoprotein cholesterol (HDL-C) levels are among the most important risk factors for coronary …
lipoprotein cholesterol (HDL-C) levels are among the most important risk factors for coronary …
Pervasive antagonistic interactions among hybrid incompatibility loci
Species barriers, expressed as hybrid inviability and sterility, are often due to epistatic
interactions between divergent loci from two lineages. Theoretical models indicate that the …
interactions between divergent loci from two lineages. Theoretical models indicate that the …
Bacterial responses to antibiotics and their combinations
K Mitosch, T Bollenbach - Environmental microbiology reports, 2014 - Wiley Online Library
Antibiotics affect bacterial cell physiology at many levels. Rather than just compensating for
the direct cellular defects caused by the drug, bacteria respond to antibiotics by changing …
the direct cellular defects caused by the drug, bacteria respond to antibiotics by changing …
Environment-dependent epistasis increases phenotypic diversity in gene regulatory networks
Mutations to gene regulatory networks can be maladaptive or a source of evolutionary
novelty. Epistasis confounds our understanding of how mutations affect the expression …
novelty. Epistasis confounds our understanding of how mutations affect the expression …
On the incongruence of genotype-phenotype and fitness landscapes
The map** from genotype to phenotype to fitness typically involves multiple nonlinearities
that can transform the effects of mutations. For example, mutations may contribute additively …
that can transform the effects of mutations. For example, mutations may contribute additively …