A key challenge in the effort to simulate today's quantum computing devices is the ability to
learn and encode the complex correlations that occur between qubits. Emerging …

Nonequilibrium statistical mechanics exhibit a variety of complex phenomena far from
equilibrium. It inherits challenges of equilibrium, including accurately describing the joint …

Learning the underlying slow and fast dynamics of a system is instrumental for many
practical applications related to the system. However, existing approaches are limited in …

The dynamics of locally interacting particles that are distributed in space give rise to a
multitude of complex behaviours. However the simulation of reaction–diffusion processes …

Central to analyzing noisy gene expression systems is solving the Chemical Master
Equation (CME), which characterizes the probability evolution of the reacting species' copy …

This work develops and analyzes a class of adaptive biased stochastic optimization (ABSO)
algorithms from the perspective of the GEneralized Adaptive gRadient (GEAR) method that …

Natural products are important sources for drug development, and the accurate prediction of
their structures assembled by modular proteins is an area of great interest. In this study, we …

The probabilistic programming paradigm is gaining popularity due to the possibility of easily
representing probabilistic systems and running a number of off-the-shelf inference …

Noise is usually regarded as adversarial to extracting effective dynamics from time series,
such that conventional approaches usually aim at learning dynamics by mitigating the noisy …

Stochastic reaction networks are widely used in the modeling of stochastic systems across
diverse domains such as biology, chemistry, physics, and ecology. However, the …