Circulating miRNA analysis for cancer diagnostics and therapy
Successful treatment of cancer depends on early diagnosis and effective monitoring of
patients' response to therapy. Traditional tools based on tumor biopsies lack the sensitivity …
patients' response to therapy. Traditional tools based on tumor biopsies lack the sensitivity …
Multi-omics analysis reveals contextual tumor suppressive and oncogenic gene modules within the acute hypoxic response
Cellular adaptation to hypoxia is a hallmark of cancer, but the relative contribution of hypoxia-
inducible factors (HIFs) versus other oxygen sensors to tumorigenesis is unclear. We employ …
inducible factors (HIFs) versus other oxygen sensors to tumorigenesis is unclear. We employ …
The shape of gene expression distributions matter: how incorporating distribution shape improves the interpretation of cancer transcriptomic data
Background In genomics, we often assume that continuous data, such as gene expression,
follow a specific kind of distribution. However we rarely stop to question the validity of this …
follow a specific kind of distribution. However we rarely stop to question the validity of this …
Exploring additional valuable information from single-cell RNA-seq data
Y Li, Q Xu, D Wu, G Chen - Frontiers in Cell and Developmental …, 2020 - frontiersin.org
Single-cell RNA-seq (scRNA-seq) technologies are broadly applied to dissect the cellular
heterogeneity and expression dynamics, providing unprecedented insights into single-cell …
heterogeneity and expression dynamics, providing unprecedented insights into single-cell …
Spatially-resolved transcriptomics reveal macrophage heterogeneity and prognostic significance in diffuse large B-cell lymphoma
Macrophages are abundant immune cells in the microenvironment of diffuse large B-cell
lymphoma (DLBCL). Macrophage estimation by immunohistochemistry shows varying …
lymphoma (DLBCL). Macrophage estimation by immunohistochemistry shows varying …
Mutual-assistance learning for standalone mono-modality survival analysis of human cancers
Z Ning, Z Zhao, Q Feng, W Chen… - IEEE Transactions on …, 2022 - ieeexplore.ieee.org
Current survival analysis of cancers confronts two key issues. While comprehensive
perspectives provided by data from multiple modalities often promote the performance of …
perspectives provided by data from multiple modalities often promote the performance of …
Influence of tumor-infiltrating immune cells on local control rate, distant metastasis, and survival in patients with soft tissue sarcoma
MA Smolle, L Herbsthofer, M Goda, B Granegger… - …, 2021 - Taylor & Francis
Soft tissue sarcomas (STS) are considered non-immunogenic, although distinct entities
respond to anti-tumor agents targeting the tumor microenvironment. This study's aims were …
respond to anti-tumor agents targeting the tumor microenvironment. This study's aims were …
[HTML][HTML] Biomarkers in acute myeloid leukemia: From state of the art in risk classification to future challenges of RNA editing as disease predictor and therapy target
A Quattrocchi, LV Cappelli, G De Simone… - Aspects of Molecular …, 2023 - Elsevier
Abstract Acute Myeloid Leukemia (AML) is currently diagnosed based on morphological
assessment of myeloid cells' features, immunophenotypic characterization of specific cell …
assessment of myeloid cells' features, immunophenotypic characterization of specific cell …
Unveiling the hub genes in the SIGLECs family in colon adenocarcinoma with machine learning
T Li, J Yao - Frontiers in Genetics, 2024 - frontiersin.org
Background Despite the recognized roles of Sialic acid-binding Ig-like lectins (SIGLECs) in
endocytosis and immune regulation across cancers, their molecular intricacies in colon …
endocytosis and immune regulation across cancers, their molecular intricacies in colon …
[BUKU][B] Artificial intelligence and high-performance computing for accelerating structure-based drug discovery
AR Clyde - 2022 - search.proquest.com
Traditional techniques for discovering novel drugs are too slow for 21st challenges, from
precision oncology to emerging global pandemics. The COVID-19 Pandemic demonstrated …
precision oncology to emerging global pandemics. The COVID-19 Pandemic demonstrated …