A survey of best practices for RNA-seq data analysis
Abstract RNA-sequencing (RNA-seq) has a wide variety of applications, but no single
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
analysis pipeline can be used in all cases. We review all of the major steps in RNA-seq data …
–Omic and electronic health record big data analytics for precision medicine
PY Wu, CW Cheng, CD Kaddi… - IEEE Transactions …, 2016 - ieeexplore.ieee.org
Objective: Rapid advances of high-throughput technologies and wide adoption of electronic
health records (EHRs) have led to fast accumulation of–omic and EHR data. These …
health records (EHRs) have led to fast accumulation of–omic and EHR data. These …
Molecular subtypes in head and neck cancer exhibit distinct patterns of chromosomal gain and loss of canonical cancer genes
Head and neck squamous cell carcinoma (HNSCC) is a frequently fatal heterogeneous
disease. Beyond the role of human papilloma virus (HPV), no validated molecular …
disease. Beyond the role of human papilloma virus (HPV), no validated molecular …
Demystifying emerging bulk RNA-Seq applications: the application and utility of bioinformatic methodology
Significant innovations in next-generation sequencing techniques and bioinformatics tools
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
have impacted our appreciation and understanding of RNA. Practical RNA sequencing …
Leveraging transcript quantification for fast computation of alternative splicing profiles
Alternative splicing plays an essential role in many cellular processes and bears major
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …
relevance in the understanding of multiple diseases, including cancer. High-throughput RNA …