ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology

VA Ivanisenko, OV Saik, NV Ivanisenko, ES Tiys… - BMC systems …, 2015 - Springer
Background Sufficient knowledge of molecular and genetic interactions, which comprise the
entire basis of the functioning of living systems, is one of the necessary requirements for …

MinOmics, an integrative and immersive tool for multi-omics analysis

A Maes, X Martinez, K Druart, B Laurent… - Journal of integrative …, 2018 - degruyter.com
Proteomic and transcriptomic technologies resulted in massive biological datasets, their
interpretation requiring sophisticated computational strategies. Efficient and intuitive real …

Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome)

AS Glotov, ES Tiys, ES Vashukova, VS Pakin… - BMC systems …, 2015 - Springer
Background Pre-eclampsia is the most common complication occurring during pregnancy. In
the majority of cases, it is concurrent with other pathologies in a comorbid manner (frequent …

Computer analysis of glioma transcriptome profiling: alternative splicing events

VN Babenko, NV Gubanova, AO Bragin… - Journal of Integrative …, 2017 - degruyter.com
Here we present the analysis of alternative splicing events on an example of glioblastoma
cell culture samples using a set of computer tools in combination with database integration …

VANESA-A software application for the visualization and analysis of networks in systems biology applications

C Brinkrolf, SJ Janowski, B Kormeier… - Journal of integrative …, 2014 - degruyter.com
VANESA is a modeling software for the automatic reconstruction and analysis of biological
networks based on life-science database information. Using VANESA, scientists are able to …

Network visualization for integrative bioinformatics

A Kerren, F Schreiber - … in Integrative Bioinformatics: towards the virtual …, 2013 - Springer
Approaches to investigate biological processes have been of strong interest in the past few
years and are the focus of several research areas like systems biology. Biological networks …

Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets

B Sommer, B Kormeier, PS Demenkov… - … of bioinformatics and …, 2013 - World Scientific
The CELLmicrocosmos PathwayIntegration (CmPI) was developed to support and visualize
the subcellular localization prediction of protein-related data such as protein-interaction …

Prediction of autism susceptibility genes based on association rules

L Gong, Y Yan, J **e, H Liu… - Journal of neuroscience …, 2012 - Wiley Online Library
Autism is a complex neuropsychiatric disorder with high heritability and an unclear etiology.
The identification of key genes related to autism may elucidate its etiology. The current study …

Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development

N Turenne, E Tiys, V Ivanisenko, N Yudin, E Ignatieva… - BioData mining, 2012 - Springer
Background Since processes in well-known model organisms have specific features
different from those in Bos taurus, the organism under study, a good way to describe gene …

Integration and virtual reality exploration of biomedical data with CmPI and VANTED

B Sommer, F Schreiber - It-Information Technology, 2017 - degruyter.com
Modelling and analysis of metabolic processes is an established research field in
Computational Systems Biology and Medicine. There are many different approaches for …