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ANDSystem: an Associative Network Discovery System for automated literature mining in the field of biology
Background Sufficient knowledge of molecular and genetic interactions, which comprise the
entire basis of the functioning of living systems, is one of the necessary requirements for …
entire basis of the functioning of living systems, is one of the necessary requirements for …
MinOmics, an integrative and immersive tool for multi-omics analysis
Proteomic and transcriptomic technologies resulted in massive biological datasets, their
interpretation requiring sophisticated computational strategies. Efficient and intuitive real …
interpretation requiring sophisticated computational strategies. Efficient and intuitive real …
Molecular association of pathogenetic contributors to pre-eclampsia (pre-eclampsia associome)
AS Glotov, ES Tiys, ES Vashukova, VS Pakin… - BMC systems …, 2015 - Springer
Background Pre-eclampsia is the most common complication occurring during pregnancy. In
the majority of cases, it is concurrent with other pathologies in a comorbid manner (frequent …
the majority of cases, it is concurrent with other pathologies in a comorbid manner (frequent …
Computer analysis of glioma transcriptome profiling: alternative splicing events
VN Babenko, NV Gubanova, AO Bragin… - Journal of Integrative …, 2017 - degruyter.com
Here we present the analysis of alternative splicing events on an example of glioblastoma
cell culture samples using a set of computer tools in combination with database integration …
cell culture samples using a set of computer tools in combination with database integration …
VANESA-A software application for the visualization and analysis of networks in systems biology applications
C Brinkrolf, SJ Janowski, B Kormeier… - Journal of integrative …, 2014 - degruyter.com
VANESA is a modeling software for the automatic reconstruction and analysis of biological
networks based on life-science database information. Using VANESA, scientists are able to …
networks based on life-science database information. Using VANESA, scientists are able to …
Network visualization for integrative bioinformatics
Approaches to investigate biological processes have been of strong interest in the past few
years and are the focus of several research areas like systems biology. Biological networks …
years and are the focus of several research areas like systems biology. Biological networks …
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets
B Sommer, B Kormeier, PS Demenkov… - … of bioinformatics and …, 2013 - World Scientific
The CELLmicrocosmos PathwayIntegration (CmPI) was developed to support and visualize
the subcellular localization prediction of protein-related data such as protein-interaction …
the subcellular localization prediction of protein-related data such as protein-interaction …
Prediction of autism susceptibility genes based on association rules
L Gong, Y Yan, J **e, H Liu… - Journal of neuroscience …, 2012 - Wiley Online Library
Autism is a complex neuropsychiatric disorder with high heritability and an unclear etiology.
The identification of key genes related to autism may elucidate its etiology. The current study …
The identification of key genes related to autism may elucidate its etiology. The current study …
Finding biomarkers in non-model species: literature mining of transcription factors involved in bovine embryo development
Background Since processes in well-known model organisms have specific features
different from those in Bos taurus, the organism under study, a good way to describe gene …
different from those in Bos taurus, the organism under study, a good way to describe gene …
Integration and virtual reality exploration of biomedical data with CmPI and VANTED
Modelling and analysis of metabolic processes is an established research field in
Computational Systems Biology and Medicine. There are many different approaches for …
Computational Systems Biology and Medicine. There are many different approaches for …