Automated reaction kinetics of gas-phase organic species over multiwell potential energy surfaces

J Zádor, C Martí, R Van de Vijver… - The Journal of …, 2023 - ACS Publications
Automation of rate-coefficient calculations for gas-phase organic species became possible
in recent years and has transformed how we explore these complicated systems …

Estimating free energy barriers for heterogeneous catalytic reactions with machine learning potentials and umbrella integration

S Stocker, H Jung, G Csányi… - Journal of Chemical …, 2023 - ACS Publications
Predicting the rate constants of elementary reaction steps is key for the computational
modeling of catalytic processes. Within transition state theory (TST), this requires an …

Analytical ab initio hessian from a deep learning potential for transition state optimization

ECY Yuan, A Kumar, X Guan, ED Hermes… - Nature …, 2024 - nature.com
Identifying transition states—saddle points on the potential energy surface connecting
reactant and product minima—is central to predicting kinetic barriers and understanding …

Evaluation of rate coefficients in the gas phase using machine-learned potentials

C Martí, C Devereux, HN Najm… - The Journal of Physical …, 2024 - ACS Publications
We assess the capability of machine-learned potentials to compute rate coefficients by
training a neural network (NN) model and applying it to describe the chemical landscape on …

Pynta─ An Automated Workflow for Calculation of Surface and Gas–Surface Kinetics

MS Johnson, M Gierada, ED Hermes… - Journal of Chemical …, 2023 - ACS Publications
Many important industrial processes rely on heterogeneous catalytic systems. However,
given all possible catalysts and conditions of interest, it is impractical to optimize most …

Geometry optimization: a comparison of different open-source geometry optimizers

A Shajan, M Manathunga, AW Götz… - Journal of Chemical …, 2023 - ACS Publications
Based on a series of energy minimizations with starting structures obtained from the Baker
test set of 30 organic molecules, a comparison is made between various open-source …

3T-VASP: Fast ab-initio electrochemical reactor via multi-scale gradient energy minimization

JP Mailoa, X Li, S Zhang - Nature Communications, 2024 - nature.com
Ab-initio methods such as density functional theory (DFT) is useful for fundamental atomistic-
level study and is widely used across many scientific fields, including for the discovery of …

Accessing Numerical Energy Hessians with Graph Neural Network Potentials and Their Application in Heterogeneous Catalysis

B Wander, J Musielewicz, R Cheula… - The Journal of Physical …, 2024 - ACS Publications
Access to the potential energy Hessian enables determination of the Gibbs free energy and
certain approaches to transition state search and optimization. Here, we demonstrate that off …

ML-Accelerated Automatic Process Exploration Reveals Facile O-Induced Pd Step-Edge Restructuring on Catalytic Time Scales

P Poths, KC Lai, F Cannizzaro, C Scheurer… - ACS …, 2024 - ACS Publications
We combine automatic process exploration with an iteratively trained machine-learning
interatomic potential to systematically identify elementary processes occurring during the …

A Story of Three Levels of Sophistication in SCF/KS-DFT Orbital Optimization Procedures

D Sethio, E Azzopardi, I Fdez. Galván… - The Journal of Physical …, 2024 - ACS Publications
In this work, three versions of self-consistent field/Kohn–Sham density functional theory
(SCF/KS-DFT) orbital optimization are described and benchmarked. The methods are a …