Small-angle X-ray and neutron scattering

CM Jeffries, J Ilavsky, A Martel, S Hinrichs… - Nature Reviews …, 2021 - nature.com
Small-angle scattering (SAS) is a technique that is able to probe the structural organization
of matter and quantify its response to changes in external conditions. X-ray and neutron …

Protein Data Bank (PDB): the single global macromolecular structure archive

SK Burley, HM Berman, GJ Kleywegt… - … : methods and protocols, 2017 - Springer
Abstract The Protein Data Bank (PDB)––the single global repository of experimentally
determined 3D structures of biological macromolecules and their complexes––was …

Mol* Viewer: modern web app for 3D visualization and analysis of large biomolecular structures

D Sehnal, S Bittrich, M Deshpande… - Nucleic acids …, 2021 - academic.oup.com
Large biomolecular structures are being determined experimentally on a daily basis using
established techniques such as crystallography and electron microscopy. In addition …

UCSF ChimeraX: Structure visualization for researchers, educators, and developers

EF Pettersen, TD Goddard, CC Huang… - Protein …, 2021 - Wiley Online Library
UCSF ChimeraX is the next‐generation interactive visualization program from the Resource
for Biocomputing, Visualization, and Informatics (RBVI), following UCSF Chimera. ChimeraX …

Reliability and accuracy of single-molecule FRET studies for characterization of structural dynamics and distances in proteins

G Agam, C Gebhardt, M Popara, R Mächtel, J Folz… - Nature …, 2023 - nature.com
Single-molecule Förster-resonance energy transfer (smFRET) experiments allow the study
of biomolecular structure and dynamics in vitro and in vivo. We performed an international …

UCSF ChimeraX: Meeting modern challenges in visualization and analysis

TD Goddard, CC Huang, EC Meng… - Protein …, 2018 - Wiley Online Library
UCSF ChimeraX is next‐generation software for the visualization and analysis of molecular
structures, density maps, 3D microscopy, and associated data. It addresses challenges in …

Protein Data Bank: the single global archive for 3D macromolecular structure data

Nucleic acids research, 2019 - academic.oup.com
Abstract The Protein Data Bank (PDB) is the single global archive of experimentally
determined three-dimensional (3D) structure data of biological macromolecules. Since …

The SWISS-MODEL Repository—new features and functionality

S Bienert, A Waterhouse, TAP De Beer… - Nucleic acids …, 2017 - academic.oup.com
Abstract SWISS-MODEL Repository (SMR) is a database of annotated 3D protein structure
models generated by the automated SWISS-MODEL homology modeling pipeline. It …

The Cambridge structural database

CR Groom, IJ Bruno, MP Lightfoot, SC Ward - Structural Science, 2016 - journals.iucr.org
The Cambridge Structural Database (CSD) contains a complete record of all published
organic and metal–organic small-molecule crystal structures. The database has been in …

Toward dynamic structural biology: Two decades of single-molecule Förster resonance energy transfer

E Lerner, T Cordes, A Ingargiola, Y Alhadid, SY Chung… - Science, 2018 - science.org
BACKGROUND Biomolecular mechanisms are typically inferred from static structural
“snapshots” obtained by x-ray crystallography, nuclear magnetic resonance (NMR) …