Protein language: post-translational modifications talking to each other

L Dai Vu, K Gevaert, I De Smet - Trends in plant science, 2018 - cell.com
Post-translational modifications (PTMs) are at the heart of many cellular signaling events.
Apart from a single regulatory PTM, there are also PTMs that function in orchestrated …

The scope, functions, and dynamics of posttranslational protein modifications

AH Millar, JL Heazlewood, C Giglione… - Annual review of …, 2019 - annualreviews.org
Assessing posttranslational modification (PTM) patterns within protein molecules and
reading their functional implications present grand challenges for plant biology. We combine …

Resolving the complexity of ubiquitin networks

K Kliza, K Husnjak - Frontiers in molecular biosciences, 2020 - frontiersin.org
Ubiquitination regulates nearly all cellular processes by coordinated activity of ubiquitin
writers (E1, E2, and E3 enzymes), erasers (deubiquitinating enzymes) and readers (proteins …

Current methodologies in protein ubiquitination characterization: from ubiquitinated protein to ubiquitin chain architecture

M Sun, X Zhang - Cell & Bioscience, 2022 - Springer
Ubiquitination is a versatile post-translational modification (PTM), which regulates diverse
fundamental features of protein substrates, including stability, activity, and localization …

Dynamic control of the high-affinity iron uptake complex in root epidermal cells

A Martín-Barranco, J Spielmann, G Dubeaux… - Plant …, 2020 - academic.oup.com
In plants, iron uptake from the soil is tightly regulated to ensure optimal growth and
development. Iron absorption in Arabidopsis root epidermal cells requires the IRT1 …

Proteomics: a powerful tool to study plant responses to biotic stress

Y Liu, S Lu, K Liu, S Wang, L Huang, L Guo - Plant Methods, 2019 - Springer
In recent years, mass spectrometry-based proteomics has provided scientists with the
tremendous capability to study plants more precisely than previously possible. Currently …

The Plant PTM Viewer, a central resource for exploring plant protein modifications

P Willems, A Horne, T Van Parys… - The Plant …, 2019 - Wiley Online Library
Post‐translational modifications (PTM s) of proteins are central in any kind of cellular
signaling. Modern mass spectrometry technologies enable comprehensive identification and …

Detection of the Arabidopsis Proteome and Its Post-translational Modifications and the Nature of the Unobserved (Dark) Proteome in PeptideAtlas

KJ van Wijk, T Leppert, Z Sun, A Kearly… - Journal of proteome …, 2023 - ACS Publications
This study describes a new release of the Arabidopsis thaliana PeptideAtlas proteomics
resource (build 2023–10) providing protein sequence coverage, matched mass …

Emerging role of the plant ERF transcription factors in coordinating wound defense responses and repair

J Heyman, B Canher, A Bisht… - Journal of Cell …, 2018 - journals.biologists.com
Plants react to wounding through the activation of both defense and repair pathways, but
how these two responses are coordinated is unclear. Here, we put forward the hypothesis …

Nitrogen-regulated theanine and flavonoid biosynthesis in tea plant roots: protein-level regulation revealed by multiomics analyses

Y Wang, X Cheng, T Yang, Y Su, S Lin… - Journal of Agricultural …, 2021 - ACS Publications
Theanine and flavonoids (especially proanthocyanidins) are the most important and
abundant secondary metabolites synthesized in the roots of tea plants. Nitrogen promotes …