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Emergence and fate of stem cell–like Tcf7+ CD8+ T cells during a primary immune response to viral infection
JG Silva, D Pais Ferreira, A Dumez, T Wyss… - Science …, 2023 - science.org
In response to infection, naïve CD8+ T (TN) cells yield a large pool of short-lived terminal
effector (TTE) cells that eliminate infected host cells. In parallel, a minor population of stem …
effector (TTE) cells that eliminate infected host cells. In parallel, a minor population of stem …
[HTML][HTML] Changes in chromatin accessibility and transcriptional landscape induced by HDAC inhibitors in TP53 mutated patient-derived colon cancer organoids
T Gagliano, E Kerschbamer, U Baccarani… - Biomedicine & …, 2024 - Elsevier
Here we present the generation and characterization of patient-derived organoids (PDOs)
from colorectal cancer patients. PDOs derived from two patients with TP53 mutations were …
from colorectal cancer patients. PDOs derived from two patients with TP53 mutations were …
Emerging Approaches to Profile Accessible Chromatin from Formalin-Fixed Paraffin-Embedded Sections
Nucleosomes are non-uniformly distributed across eukaryotic genomes, with stretches of
'open'chromatin strongly associated with transcriptionally active promoters and enhancers …
'open'chromatin strongly associated with transcriptionally active promoters and enhancers …
Distinct structural and functional heterochromatin partitioning of lamin B1 and lamin B2 revealed using genome-wide nicking enzyme epitope targeted DNA …
Gene expression is regulated by chromatin DNA methylation and other features, including
histone post-translational modifications (PTMs), chromatin remodelers and transcription …
histone post-translational modifications (PTMs), chromatin remodelers and transcription …
Poly ADP-ribosylation of SET8 leads to aberrant H4K20 methylation in mammalian nuclear genome
In mammalian cells, SET8 mediated Histone H4 Lys 20 monomethylation (H4K20me1) has
been implicated in regulating mitotic condensation, DNA replication, DNA damage …
been implicated in regulating mitotic condensation, DNA replication, DNA damage …
Universal NicE-seq for high-resolution accessible chromatin profiling for formaldehyde-fixed and FFPE tissues
Accessible chromatin plays a central role in gene expression and chromatin architecture.
Current accessible chromatin approaches depend on limited digestion/cutting and pasting …
Current accessible chromatin approaches depend on limited digestion/cutting and pasting …
One-pot universal NicE-seq: all enzymatic downstream processing of 4% formaldehyde crosslinked cells for chromatin accessibility genomics
Background Accessible chromatin landscape allows binding of transcription factors, and
remodeling of promoter and enhancer elements during development. Chromatin …
remodeling of promoter and enhancer elements during development. Chromatin …
Transcription suppression is mediated by the HDAC1–Sin3 complex in Xenopus nucleoplasmic extract
CE Quaas, B Lin, DT Long - Journal of Biological Chemistry, 2022 - jbc.org
Modification of histones provides a dynamic mechanism to regulate chromatin structure and
access to DNA. Histone acetylation, in particular, plays a prominent role in controlling the …
access to DNA. Histone acetylation, in particular, plays a prominent role in controlling the …
Distinct structural and functional heterochromatin partitioning of lamin B1 and B2 revealed using genome-wide Nicking Enzyme Epitope targeted DNA sequencing
A genome-wide chromatin profiling technology, named as Nicking Enzyme Epitope targeted
DNA sequencing (NEED-seq) in which antibody-targeted controlled nicking by Nt. CviPII …
DNA sequencing (NEED-seq) in which antibody-targeted controlled nicking by Nt. CviPII …
[PDF][PDF] Emerging Approaches to Profile Accessible Chromatin from Ffpe Sections
VUS Kumary, BJ Venters, K Raman, S Sen, PO Estève… - 2024 - preprints.org
Nucleosomes are non-uniformly distributed across eukarytic genomes, with stretches of
'open'chromatin strongly associated with transcriptionally active promoters and enhancers …
'open'chromatin strongly associated with transcriptionally active promoters and enhancers …