Roles of microRNAs in abiotic stress response and characteristics regulation of plant

F Zhang, J Yang, N Zhang, J Wu, H Si - Frontiers in Plant Science, 2022 - frontiersin.org
MicroRNAs (miRNAs) are a class of non-coding endogenous small RNAs (long 20–24
nucleotides) that negatively regulate eukaryotes gene expression at post-transcriptional …

Plant and animal small RNA communications between cells and organisms

X Chen, O Rechavi - Nature Reviews Molecular Cell Biology, 2022 - nature.com
Since the discovery of eukaryotic small RNAs as the main effectors of RNA interference in
the late 1990s, diverse types of endogenous small RNAs have been characterized, most …

Revisiting criteria for plant microRNA annotation in the era of big data

MJ Axtell, BC Meyers - The Plant Cell, 2018 - academic.oup.com
Abstract MicroRNAs (miRNAs) are∼ 21-nucleotide-long regulatory RNAs that arise from
endonucleolytic processing of hairpin precursors. Many function as essential …

miRDeepFinder: a miRNA analysis tool for deep sequencing of plant small RNAs

F **e, P **ao, D Chen, L Xu, B Zhang - Plant molecular biology, 2012 - Springer
Abstract miRDeepFinder is a software package developed to identify and functionally
analyze plant microRNAs (miRNAs) and their targets from small RNA datasets obtained from …

miRBase: integrating microRNA annotation and deep-sequencing data

A Kozomara, S Griffiths-Jones - Nucleic acids research, 2010 - academic.oup.com
Abstract miRBase is the primary online repository for all microRNA sequences and
annotation. The current release (miRBase 16) contains over 15 000 microRNA gene loci in …

Classification and comparison of small RNAs from plants

MJ Axtell - Annual review of plant biology, 2013 - annualreviews.org
Regulatory small RNAs, which range in size from 20 to 24 nucleotides, are ubiquitous
components of endogenous plant transcriptomes, as well as common responses to …

Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks

Q Fei, R **a, BC Meyers - The Plant Cell, 2013 - academic.oup.com
Plant genomes are the source of large numbers of small RNAs, generated via a variety of
genetically separable pathways. Several of these pathways converge in the production of …

A microRNA superfamily regulates nucleotide binding site–leucine-rich repeats and other mRNAs

PV Shivaprasad, HM Chen, K Patel, DM Bond… - The Plant …, 2012 - academic.oup.com
Abstract Analysis of tomato (Solanum lycopersicum) small RNA data sets revealed the
presence of a regulatory cascade affecting disease resistance. The initiators of the cascade …

RNA-based antiviral immunity

SW Ding - Nature Reviews Immunology, 2010 - nature.com
In eukaryotic RNA-based antiviral immunity, viral double-stranded RNA is recognized as a
pathogen-associated molecular pattern and processed into small interfering RNAs (siRNAs) …

Evolution and Functional Diversification of MIRNA Genes

JT Cuperus, N Fahlgren, JC Carrington - The Plant Cell, 2011 - academic.oup.com
MicroRNAs (miRNAs) are small regulatory RNAs found in diverse eukaryotic lineages. In
plants, a minority of annotated MIRNA gene families are conserved between plant families …