Antibiotic perturbations to the gut microbiome

SRS Fishbein, B Mahmud, G Dantas - Nature Reviews Microbiology, 2023 - nature.com
Antibiotic-mediated perturbation of the gut microbiome is associated with numerous
infectious and autoimmune diseases of the gastrointestinal tract. Yet, as the gut microbiome …

Bench to bedside—new insights into the pathogenesis of necrotizing enterocolitis

DJ Hackam, CP Sodhi - Nature reviews Gastroenterology & hepatology, 2022 - nature.com
Necrotizing enterocolitis (NEC) is the leading cause of death and disability from
gastrointestinal disease in premature infants. Recent discoveries have shed light on a …

inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains

MR Olm, A Crits-Christoph, K Bouma-Gregson… - Nature …, 2021 - nature.com
Coexisting microbial cells of the same species often exhibit genetic variation that can affect
phenotypes ranging from nutrient preference to pathogenicity. Here we present inStrain, a …

Human milk oligosaccharide DSLNT and gut microbiome in preterm infants predicts necrotising enterocolitis

AC Masi, ND Embleton, CA Lamb, G Young… - Gut, 2021 - gut.bmj.com
Objective Necrotising enterocolitis (NEC) is a devastating intestinal disease primarily
affecting preterm infants. The underlying mechanisms are poorly understood: mother's own …

Clinical implications of preterm infant gut microbiome development

DB Healy, CA Ryan, RP Ross, C Stanton… - Nature …, 2022 - nature.com
Perturbations to the infant gut microbiome during the first weeks to months of life affect
growth, development and health. In particular, assembly of an altered intestinal microbiota …

Maternal IgA protects against the development of necrotizing enterocolitis in preterm infants

KP Gopalakrishna, BR Macadangdang, MB Rogers… - Nature medicine, 2019 - nature.com
Neonates are protected from colonizing bacteria by antibodies secreted into maternal milk.
Necrotizing enterocolitis (NEC) is a disease of neonatal preterm infants with high morbidity …

BiG-SLiCE: A highly scalable tool maps the diversity of 1.2 million biosynthetic gene clusters

SA Kautsar, JJJ van der Hooft, D de Ridder… - …, 2021 - academic.oup.com
Background Genome mining for biosynthetic gene clusters (BGCs) has become an integral
part of natural product discovery. The> 200,000 microbial genomes now publicly available …

Fecal filtrate transplantation protects against necrotizing enterocolitis

A Brunse, L Deng, X Pan, Y Hui… - The ISME …, 2022 - academic.oup.com
Necrotizing enterocolitis (NEC) is a life-threatening gastrointestinal disorder afflicting
preterm infants, which is currently unpreventable. Fecal microbiota transplantation (FMT) is a …

[HTML][HTML] Ultra-deep sequencing of Hadza hunter-gatherers recovers vanishing gut microbes

MM Carter, MR Olm, BD Merrill, D Dahan, S Tripathi… - Cell, 2023 - cell.com
The gut microbiome modulates immune and metabolic health. Human microbiome data are
biased toward industrialized populations, limiting our understanding of non-industrialized …

Probiotics to prevent necrotising enterocolitis in very preterm or very low birth weight infants

S Sharif, N Meader, SJ Oddie… - Cochrane Database …, 2020 - cochranelibrary.com
Background Intestinal dysbiosis may contribute to the pathogenesis of necrotising
enterocolitis (NEC) in very preterm or very low birth weight infants. Dietary supplementation …