Phylogenomics and the flowering plant tree of life
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …
technologies continue to provide an impetus for plant phylogenetic study. In the past …
A guide to carrying out a phylogenomic target sequence capture project
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …
large portions of the genome. Instead of sequencing and annotating whole genomes, many …
A comprehensive phylogenomic platform for exploring the angiosperm tree of life
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …
Phylogenomics and the rise of the angiosperms
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …
robust understanding of angiosperm evolution is required to explain their rise to ecological …
Taming the beast: a revised classification of Cortinariaceae based on genomic data
Family Cortinariaceae currently includes only one genus, Cortinarius, which is the largest
Agaricales genus, with thousands of species worldwide. The species are important …
Agaricales genus, with thousands of species worldwide. The species are important …
[HTML][HTML] Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)
Abstract Subfamily Caesalpinioideae with ca. 4,600 species in 152 genera is the second-
largest subfamily of legumes (Leguminosae) and forms an ecologically and economically …
largest subfamily of legumes (Leguminosae) and forms an ecologically and economically …
Tackling rapid radiations with targeted sequencing
In phylogenetic studies across angiosperms, at various taxonomic levels, polytomies have
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …
Repeated upslope biome shifts in Saxifraga during late-Cenozoic climate cooling
Mountains are among the most biodiverse places on Earth, and plant lineages that inhabit
them have some of the highest speciation rates ever recorded. Plant diversity within the …
them have some of the highest speciation rates ever recorded. Plant diversity within the …
Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants
The reduced cost of high‐throughput sequencing and the development of gene sets with
wide phylogenetic applicability has led to the rise of sequence capture methods as a …
wide phylogenetic applicability has led to the rise of sequence capture methods as a …
Capturing single‐copy nuclear genes, organellar genomes, and nuclear ribosomal DNA from deep genome skimming data for plant phylogenetics: A case study in …
With the decreasing cost and availability of many newly developed bioinformatics pipelines,
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …
next‐generation sequencing (NGS) has revolutionized plant systematics in recent years …