Phylogenomics and the flowering plant tree of life

C Guo, Y Luo, LM Gao, TS Yi, HT Li… - Journal of Integrative …, 2023 - Wiley Online Library
The advances accelerated by next‐generation sequencing and long‐read sequencing
technologies continue to provide an impetus for plant phylogenetic study. In the past …

Ancient DNA genomics and the renaissance of herbaria

HA Burbano, RM Gutaker - Science, 2023 - science.org
Herbaria are undergoing a renaissance as valuable sources of genomic data for exploring
plant evolution, ecology, and diversity. Ancient DNA retrieved from herbarium specimens …

Phylogenomics and the rise of the angiosperms

AR Zuntini, T Carruthers, O Maurin, PC Bailey… - Nature, 2024 - nature.com
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods,. A
robust understanding of angiosperm evolution is required to explain their rise to ecological …

A comprehensive phylogenomic platform for exploring the angiosperm tree of life

WJ Baker, P Bailey, V Barber, A Barker… - Systematic …, 2022 - academic.oup.com
The tree of life is the fundamental biological roadmap for navigating the evolution and
properties of life on Earth, and yet remains largely unknown. Even angiosperms (flowering …

Taming the beast: a revised classification of Cortinariaceae based on genomic data

K Liimatainen, JT Kim, L Pokorny, PM Kirk, B Dentinger… - Fungal Diversity, 2022 - Springer
Family Cortinariaceae currently includes only one genus, Cortinarius, which is the largest
Agaricales genus, with thousands of species worldwide. The species are important …

 Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)

JJ Ringelberg, EJM Koenen, JR Iganci… - …, 2022 - pmc.ncbi.nlm.nih.gov
 Abstract Subfamily Caesalpinioideae with ca. 4,600 species in 152 genera is the second-
largest subfamily of legumes (Leguminosae) and forms an ecologically and economically …

Tackling rapid radiations with targeted sequencing

I Larridon, T Villaverde, AR Zuntini, L Pokorny… - Frontiers in plant …, 2020 - frontiersin.org
In phylogenetic studies across angiosperms, at various taxonomic levels, polytomies have
persisted despite efforts to resolve them by increasing sampling of taxa and loci. The large …

A guide to carrying out a phylogenomic target sequence capture project

T Andermann, MF Torres Jiménez… - Frontiers in …, 2020 - frontiersin.org
High-throughput DNA sequencing techniques enable time-and cost-effective sequencing of
large portions of the genome. Instead of sequencing and annotating whole genomes, many …

Strategies for reducing per‐sample costs in target capture sequencing for phylogenomics and population genomics in plants

H Hale, EM Gardner, J Viruel, L Pokorny… - Applications in plant …, 2020 - Wiley Online Library
The reduced cost of high‐throughput sequencing and the development of gene sets with
wide phylogenetic applicability has led to the rise of sequence capture methods as a …

Exploring Angiosperms353: An open, community toolkit for collaborative phylogenomic research on flowering plants

WJ Baker, S Dodsworth, F Forest, SW Graham… - 2021 - ttu-ir.tdl.org
The unveiling of the angiosperm (flowering plant) tree of life over the past three decades has
been one of the great success stories of modern plant biology. Flowering plants underpin …