Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery
W Wilman, S Wróbel, W Bielska… - Briefings in …, 2022 - academic.oup.com
Antibodies are versatile molecular binders with an established and growing role as
therapeutics. Computational approaches to develo** and designing these molecules are …
therapeutics. Computational approaches to develo** and designing these molecules are …
Computational approaches to therapeutic antibody design: established methods and emerging trends
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …
Adaptive immune receptor repertoire analysis
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding
Antibody-antigen binding relies on the specific interaction of amino acids at the paratope-
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …
Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics
Therapeutic monoclonal antibodies and their derivatives are key components of clinical
pipelines in the global biopharmaceutical industry. The availability of large datasets of …
pipelines in the global biopharmaceutical industry. The availability of large datasets of …
Understanding the human antibody repertoire
AR Rees - MAbs, 2020 - Taylor & Francis
The origins of the various elements in the human antibody repertoire have been and still are
subject to considerable uncertainty. Uncertainty in respect of whether the various elements …
subject to considerable uncertainty. Uncertainty in respect of whether the various elements …
How repertoire data are changing antibody science
C Marks, CM Deane - Journal of Biological Chemistry, 2020 - ASBMB
Antibodies are vital proteins of the immune system that recognize potentially harmful
molecules and initiate their removal. Mammals can efficiently create vast numbers of …
molecules and initiate their removal. Mammals can efficiently create vast numbers of …
Maturation of the human immunoglobulin heavy chain repertoire with age
B cells play a central role in adaptive immune processes, mainly through the production of
antibodies. The maturation of the B cell system with age is poorly studied. We extensively …
antibodies. The maturation of the B cell system with age is poorly studied. We extensively …
Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires
The adaptive immune system is a natural diagnostic sensor and therapeutic. It recognizes
threats earlier than clinical symptoms manifest and neutralizes antigens with exquisite …
threats earlier than clinical symptoms manifest and neutralizes antigens with exquisite …
Structural modeling of antibody variable regions using deep learning—progress and perspectives on drug discovery
I Jaszczyszyn, W Bielska, T Gawlowski… - Frontiers in Molecular …, 2023 - frontiersin.org
AlphaFold2 has hallmarked a generational improvement in protein structure prediction. In
particular, advances in antibody structure prediction have provided a highly translatable …
particular, advances in antibody structure prediction have provided a highly translatable …