Machine-designed biotherapeutics: opportunities, feasibility and advantages of deep learning in computational antibody discovery

W Wilman, S Wróbel, W Bielska… - Briefings in …, 2022 - academic.oup.com
Antibodies are versatile molecular binders with an established and growing role as
therapeutics. Computational approaches to develo** and designing these molecules are …

Computational approaches to therapeutic antibody design: established methods and emerging trends

RA Norman, F Ambrosetti, AMJJ Bonvin… - Briefings in …, 2020 - academic.oup.com
Antibodies are proteins that recognize the molecular surfaces of potentially noxious
molecules to mount an adaptive immune response or, in the case of autoimmune diseases …

Adaptive immune receptor repertoire analysis

V Mhanna, H Bashour, K Lê Quý, P Barennes… - Nature Reviews …, 2024 - nature.com
B cell and T cell receptor repertoires compose the adaptive immune receptor repertoire
(AIRR) of an individual. The AIRR is a unique collection of antigen-specific receptors that …

A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding

R Akbar, PA Robert, M Pavlović, JR Jeliazkov… - Cell Reports, 2021 - cell.com
Antibody-antigen binding relies on the specific interaction of amino acids at the paratope-
epitope interface. The predictability of antibody-antigen binding is a prerequisite for de novo …

Current advances in biopharmaceutical informatics: guidelines, impact and challenges in the computational developability assessment of antibody therapeutics

R Khetan, R Curtis, CM Deane, JT Hadsund, U Kar… - MAbs, 2022 - Taylor & Francis
Therapeutic monoclonal antibodies and their derivatives are key components of clinical
pipelines in the global biopharmaceutical industry. The availability of large datasets of …

Understanding the human antibody repertoire

AR Rees - MAbs, 2020 - Taylor & Francis
The origins of the various elements in the human antibody repertoire have been and still are
subject to considerable uncertainty. Uncertainty in respect of whether the various elements …

How repertoire data are changing antibody science

C Marks, CM Deane - Journal of Biological Chemistry, 2020 - ASBMB
Antibodies are vital proteins of the immune system that recognize potentially harmful
molecules and initiate their removal. Mammals can efficiently create vast numbers of …

Maturation of the human immunoglobulin heavy chain repertoire with age

M Ghraichy, JD Galson, A Kovaltsuk… - Frontiers in …, 2020 - frontiersin.org
B cells play a central role in adaptive immune processes, mainly through the production of
antibodies. The maturation of the B cell system with age is poorly studied. We extensively …

Augmenting adaptive immunity: progress and challenges in the quantitative engineering and analysis of adaptive immune receptor repertoires

AJ Brown, I Snapkov, R Akbar, M Pavlović… - … Systems Design & …, 2019 - pubs.rsc.org
The adaptive immune system is a natural diagnostic sensor and therapeutic. It recognizes
threats earlier than clinical symptoms manifest and neutralizes antigens with exquisite …

Structural modeling of antibody variable regions using deep learning—progress and perspectives on drug discovery

I Jaszczyszyn, W Bielska, T Gawlowski… - Frontiers in Molecular …, 2023 - frontiersin.org
AlphaFold2 has hallmarked a generational improvement in protein structure prediction. In
particular, advances in antibody structure prediction have provided a highly translatable …