Ecology and evolution of Mycobacterium tuberculosis

S Gagneux - Nature Reviews Microbiology, 2018 - nature.com
Tuberculosis (TB) is the number one cause of human death due to an infectious disease.
The causative agents of TB are a group of closely related bacteria known as the …

The impact of conflict on infectious disease: a systematic literature review

V Marou, CI Vardavas, K Aslanoglou, K Nikitara… - Conflict and …, 2024 - Springer
Background Conflict situations, armed or not, have been associated with emergence and
transmission of infectious diseases. This review aims to identify the pathways through which …

Bayesian inference of ancestral dates on bacterial phylogenetic trees

X Didelot, NJ Croucher, SD Bentley… - Nucleic acids …, 2018 - academic.oup.com
The sequencing and comparative analysis of a collection of bacterial genomes from a single
species or lineage of interest can lead to key insights into its evolution, ecology or …

Whole genome sequencing of Mycobacterium tuberculosis: current standards and open issues

CJ Meehan, GA Goig, TA Kohl, L Verboven… - NATURE reviews …, 2019 - nature.com
Whole genome sequencing (WGS) of Mycobacterium tuberculosis has rapidly progressed
from a research tool to a clinical application for the diagnosis and management of …

Transcontinental spread and evolution of Mycobacterium tuberculosis W148 European/Russian clade toward extensively drug resistant tuberculosis

M Merker, JP Rasigade, M Barbier, H Cox… - Nature …, 2022 - nature.com
Transmission-driven multi-/extensively drug resistant (M/XDR) tuberculosis (TB) is the
largest single contributor to human mortality due to antimicrobial resistance. A few major …

From theory to practice: translating whole-genome sequencing (WGS) into the clinic

F Balloux, OB Brynildsrud, L Van Dorp, LP Shaw… - Trends in …, 2018 - cell.com
Hospitals worldwide are facing an increasing incidence of hard-to-treat infections. Limiting
infections and providing patients with optimal drug regimens require timely strain …

Outbreak of multidrug-resistant tuberculosis in South Africa undetected by WHO-endorsed commercial tests: an observational study

NA Makhado, E Matabane, M Faccin… - The Lancet Infectious …, 2018 - thelancet.com
Background Global roll-out of rapid molecular assays is revolutionising the diagnosis of
rifampicin resistance, predictive of multidrug-resistance, in tuberculosis. However, 30% of …

Impact of wars and natural disasters on emerging and re-emerging infectious diseases

S Topluoglu, A Taylan-Ozkan, E Alp - Frontiers in public health, 2023 - frontiersin.org
Emerging Infectious Diseases (EIDs) and Re-Emerging Infectious Diseases (REIDs)
constitute significant health problems and are becoming of major importance. Up to 75% of …

Q&A: What are pathogens, and what have they done to and for us?

F Balloux, L van Dorp - BMC biology, 2017 - Springer
Microbes are found on us, within us and around us. They inhabit virtually every environment
on the planet and the bacteria carried by an average human, mostly in their gut, outnumber …

The molecular clock of Mycobacterium tuberculosis

F Menardo, S Duchêne, D Brites, S Gagneux - PLoS pathogens, 2019 - journals.plos.org
The molecular clock and its phylogenetic applications to genomic data have changed how
we study and understand one of the major human pathogens, Mycobacterium tuberculosis …