The origin of protein interactions and allostery in colocalization

J Kuriyan, D Eisenberg - Nature, 2007 - nature.com
Two fundamental principles can account for how regulated networks of interacting proteins
originated in cells. These are the law of mass action, which holds that the binding of one …

The interface of protein structure, protein biophysics, and molecular evolution

DA Liberles, SA Teichmann, I Bahar, U Bastolla… - Protein …, 2012 - Wiley Online Library
Abstract The interface of protein structural biology, protein biophysics, molecular evolution,
and molecular population genetics forms the foundations for a mechanistic understanding of …

The intracellular environment affects protein–protein interactions

SL Speer, W Zheng, X Jiang, IT Chu… - Proceedings of the …, 2021 - pnas.org
Protein–protein interactions are essential for life but rarely thermodynamically quantified in
living cells. In vitro efforts show that protein complex stability is modulated by high …

RNA catalysis through compartmentalization

CA Strulson, RC Molden, CD Keating… - Nature chemistry, 2012 - nature.com
RNA performs important cellular functions in contemporary life forms. Its ability to act both as
a catalyst and a storage mechanism for genetic information is also an important part of the …

Phase transitions in biological systems with many components

WM Jacobs, D Frenkel - Biophysical journal, 2017 - cell.com
Biological mixtures such as the cytosol may consist of thousands of distinct components.
There is now a substantial body of evidence showing that, under physiological conditions …

[HTML][HTML] Diffusive intracellular interactions: On the role of protein net charge and functional adaptation

EV Estrada, N Zhang, H Wennerström… - Current opinion in …, 2023 - Elsevier
A striking feature of nucleic acids and lipid membranes is that they all carry net negative
charge and so is true for the majority of intracellular proteins. It is suggested that the role of …

Protein misinteraction avoidance causes highly expressed proteins to evolve slowly

JR Yang, BY Liao, SM Zhuang, J Zhang - Proceedings of the National …, 2012 - pnas.org
The tempo and mode of protein evolution have been central questions in biology. Genomic
data have shown a strong influence of the expression level of a protein on its rate of …

[HTML][HTML] Single-molecule in vivo imaging of bacterial respiratory complexes indicates delocalized oxidative phosphorylation

I Llorente-Garcia, T Lenn, H Erhardt… - … et Biophysica Acta (BBA …, 2014 - Elsevier
Chemiosmotic energy coupling through oxidative phosphorylation (OXPHOS) is crucial to
life, requiring coordinated enzymes whose membrane organization and dynamics are poorly …

Protein-binding dynamics imaged in a living cell

Y Phillip, V Kiss, G Schreiber - Proceedings of the National Academy of …, 2012 - pnas.org
Historically, rate constants were determined in vitro and it was unknown whether they were
valid for in vivo biological processes. Here, we bridge this gap by measuring binding …

Modulation of α-synuclein aggregation amid diverse environmental perturbation

A Wasim, S Menon, J Mondal - Elife, 2024 - elifesciences.org
Intrinsically disordered protein α-synuclein (αS) is implicated in Parkinson's disease due to
its aberrant aggregation propensity. In a bid to identify the traits of its aggregation, here we …