Model-based design of experiments for parameter precision: State of the art

G Franceschini, S Macchietto - Chemical Engineering Science, 2008 - Elsevier
Due to the wide use and key importance of mathematical models in process engineering,
experiment design is becoming an essential tool for the rapid building and validation of …

Nanovehicular intracellular delivery systems

A Prokop, JM Davidson - Journal of pharmaceutical sciences, 2008 - Elsevier
This article provides an overview of principles and barriers relevant to intracellular drug and
gene transport, accumulation and retention (collectively called as drug delivery) by means of …

Novel metaheuristic for parameter estimation in nonlinear dynamic biological systems

M Rodriguez-Fernandez, JA Egea, JR Banga - BMC bioinformatics, 2006 - Springer
Background We consider the problem of parameter estimation (model calibration) in
nonlinear dynamic models of biological systems. Due to the frequent ill-conditioning and …

Optimization in computational systems biology

JR Banga - BMC systems biology, 2008 - Springer
Optimization aims to make a system or design as effective or functional as possible.
Mathematical optimization methods are widely used in engineering, economics and science …

Systems biology: experimental design

C Kreutz, J Timmer - The FEBS journal, 2009 - Wiley Online Library
Experimental design has a long tradition in statistics, engineering and life sciences, dating
back to the beginning of the last century when optimal designs for industrial and agricultural …

Bayesian methods in bioinformatics and computational systems biology

DJ Wilkinson - Briefings in bioinformatics, 2007 - academic.oup.com
Bayesian methods are valuable, inter alia, whenever there is a need to extract information
from data that are uncertain or subject to any kind of error or noise (including measurement …

Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments

NAW van Riel - Briefings in bioinformatics, 2006 - academic.oup.com
Abstract Systems biology applies quantitative, mechanistic modelling to study genetic
networks, signal transduction pathways and metabolic networks. Mathematical models of …

An iterative identification procedure for dynamic modeling of biochemical networks

E Balsa-Canto, AA Alonso, JR Banga - BMC systems biology, 2010 - Springer
Background Mathematical models provide abstract representations of the information
gained from experimental observations on the structure and function of a particular …