Spatial omics and multiplexed imaging to explore cancer biology

SM Lewis, ML Asselin-Labat, Q Nguyen, J Berthelet… - Nature …, 2021 - nature.com
Understanding intratumoral heterogeneity—the molecular variation among cells within a
tumor—promises to address outstanding questions in cancer biology and improve the …

[HTML][HTML] Computational pathology: a survey review and the way forward

MS Hosseini, BE Bejnordi, VQH Trinh, L Chan… - Journal of Pathology …, 2024 - Elsevier
Abstract Computational Pathology (CPath) is an interdisciplinary science that augments
developments of computational approaches to analyze and model medical histopathology …

A generalized framework of feature learning enhanced convolutional neural network for pathology-image-oriented cancer diagnosis

H Li, P Wu, Z Wang, J Mao, FE Alsaadi… - Computers in biology and …, 2022 - Elsevier
In this paper, a feature learning enhanced convolutional neural network (FLE-CNN) is
proposed for cancer detection from histopathology images. To build a highly generalized …

Colorectal Cancer Metastases in the Liver Establish Immunosuppressive Spatial Networking between Tumor-Associated SPP1+ Macrophages and Fibroblasts

A Sathe, K Mason, SM Grimes, Z Zhou… - Clinical Cancer …, 2023 - aacrjournals.org
Purpose: The liver is the most frequent metastatic site for colorectal cancer. Its
microenvironment is modified to provide a niche that is conducive for colorectal cancer cell …

A comprehensive survey of intestine histopathological image analysis using machine vision approaches

Y **g, C Li, T Du, T Jiang, H Sun, J Yang, L Shi… - Computers in Biology …, 2023 - Elsevier
Colorectal Cancer (CRC) is currently one of the most common and deadly cancers. CRC is
the third most common malignancy and the fourth leading cause of cancer death worldwide …

Artificial intelligence-based assessment of PD-L1 expression in diffuse large B cell lymphoma

F Yan, Q Da, H Yi, S Deng, L Zhu, M Zhou, Y Liu… - NPJ Precision …, 2024 - nature.com
Diffuse large B cell lymphoma (DLBCL) is an aggressive blood cancer known for its rapid
progression and high incidence. The growing use of immunohistochemistry (IHC) has …

[HTML][HTML] Deep learning-based prediction of molecular tumor biomarkers from H&E: A practical review

HD Couture - Journal of Personalized Medicine, 2022 - mdpi.com
Molecular and genomic properties are critical in selecting cancer treatments to target
individual tumors, particularly for immunotherapy. However, the methods to assess such …

[HTML][HTML] The ACROBAT 2022 challenge: automatic registration of breast cancer tissue

P Weitz, M Valkonen, L Solorzano, C Carr… - Medical image …, 2024 - Elsevier
The alignment of tissue between histopathological whole-slide-images (WSI) is crucial for
research and clinical applications. Advances in computing, deep learning, and availability of …

A multi-stain breast cancer histological whole-slide-image data set from routine diagnostics

P Weitz, M Valkonen, L Solorzano, C Carr, K Kartasalo… - Scientific Data, 2023 - nature.com
The analysis of FFPE tissue sections stained with haematoxylin and eosin (H&E) or
immunohistochemistry (IHC) is essential for the pathologic assessment of surgically …

Enabling large-scale screening of Barrett's esophagus using weakly supervised deep learning in histopathology

K Bouzid, H Sharma, S Killcoyne, DC Castro… - Nature …, 2024 - nature.com
Timely detection of Barrett's esophagus, the pre-malignant condition of esophageal
adenocarcinoma, can improve patient survival rates. The Cytosponge-TFF3 test, a non …