Opportunities and obstacles for deep learning in biology and medicine
T Ching, DS Himmelstein… - Journal of the …, 2018 - royalsocietypublishing.org
Deep learning describes a class of machine learning algorithms that are capable of
combining raw inputs into layers of intermediate features. These algorithms have recently …
combining raw inputs into layers of intermediate features. These algorithms have recently …
A neural joint model for entity and relation extraction from biomedical text
Background Extracting biomedical entities and their relations from text has important
applications on biomedical research. Previous work primarily utilized feature-based pipeline …
applications on biomedical research. Previous work primarily utilized feature-based pipeline …
A rule-based named-entity recognition method for knowledge extraction of evidence-based dietary recommendations
Evidence-based dietary information represented as unstructured text is a crucial information
that needs to be accessed in order to help dietitians follow the new knowledge arrives daily …
that needs to be accessed in order to help dietitians follow the new knowledge arrives daily …
D3NER: biomedical named entity recognition using CRF-biLSTM improved with fine-tuned embeddings of various linguistic information
Motivation Recognition of biomedical named entities in the textual literature is a highly
challenging research topic with great interest, playing as the prerequisite for extracting huge …
challenging research topic with great interest, playing as the prerequisite for extracting huge …
Neural relation extraction within and across sentence boundaries
Past work in relation extraction mostly focuses on binary relation between entity pairs within
single sentence. Recently, the NLP community has gained interest in relation extraction in …
single sentence. Recently, the NLP community has gained interest in relation extraction in …
STRING-ing together protein complexes: corpus and methods for extracting physical protein interactions from the biomedical literature
Motivation Understanding biological processes relies heavily on curated knowledge of
physical interactions between proteins. Yet, a notable gap remains between the information …
physical interactions between proteins. Yet, a notable gap remains between the information …
RegulaTome: a corpus of typed, directed, and signed relations between biomedical entities in the scientific literature
In the field of biomedical text mining, the ability to extract relations from the literature is
crucial for advancing both theoretical research and practical applications. There is a notable …
crucial for advancing both theoretical research and practical applications. There is a notable …
Leveraging dependency forest for neural medical relation extraction
Medical relation extraction discovers relations between entity mentions in text, such as
research articles. For this task, dependency syntax has been recognized as a crucial source …
research articles. For this task, dependency syntax has been recognized as a crucial source …
Novel event detection and classification for historical texts
R Sprugnoli, S Tonelli - Computational Linguistics, 2019 - direct.mit.edu
Event processing is an active area of research in the Natural Language Processing
community, but resources and automatic systems developed so far have mainly addressed …
community, but resources and automatic systems developed so far have mainly addressed …
Biomedical event extraction based on GRU integrating attention mechanism
L Li, J Wan, J Zheng, J Wang - Bmc Bioinformatics, 2018 - Springer
Background Biomedical event extraction is a crucial task in biomedical text mining. As the
primary forum for international evaluation of different biomedical event extraction …
primary forum for international evaluation of different biomedical event extraction …