Spatial profiling technologies illuminate the tumor microenvironment

O Elhanani, R Ben-Uri, L Keren - Cancer cell, 2023 - cell.com
The tumor microenvironment (TME) is composed of many different cellular and acellular
components that together drive tumor growth, invasion, metastasis, and response to …

Spatiotemporal omics for biology and medicine

L Liu, A Chen, Y Li, J Mulder, H Heyn, X Xu - Cell, 2024 - cell.com
The completion of the Human Genome Project has provided a foundational blueprint for
understanding human life. Nonetheless, understanding the intricate mechanisms through …

[HTML][HTML] Spatially resolved transcriptomics: a comprehensive review of their technological advances, applications, and challenges

M Cheng, Y Jiang, J Xu, AFA Mentis, S Wang… - Journal of Genetics and …, 2023 - Elsevier
The ability to explore life kingdoms is largely driven by innovations and breakthroughs in
technology, from the invention of the microscope 350 years ago to the recent emergence of …

Benchmarking spatial clustering methods with spatially resolved transcriptomics data

Z Yuan, F Zhao, S Lin, Y Zhao, J Yao, Y Cui… - Nature …, 2024 - nature.com
Spatial clustering, which shares an analogy with single-cell clustering, has expanded the
scope of tissue physiology studies from cell-centroid to structure-centroid with spatially …

Opportunities and challenges of single-cell and spatially resolved genomics methods for neuroscience discovery

B Bonev, CB Gonçalo, F Chen, S Codeluppi… - Nature …, 2024 - nature.com
Over the past decade, single-cell genomics technologies have allowed scalable profiling of
cell-type-specific features, which has substantially increased our ability to study cellular …

[HTML][HTML] Spatially exploring RNA biology in archival formalin-fixed paraffin-embedded tissues

Z Bai, D Zhang, Y Gao, B Tao, D Zhang, S Bao… - Cell, 2024 - cell.com
The capability to spatially explore RNA biology in formalin-fixed paraffin-embedded (FFPE)
tissues holds transformative potential for histopathology research. Here, we present …

Natural uORF variation in plants

J Wang, J Liu, Z Guo - Trends in Plant Science, 2024 - cell.com
Taking advantage of natural variation promotes our understanding of phenotypic diversity
and trait evolution, ultimately accelerating plant breeding, in which the identification of …

Single-cell analysis in rheumatic and allergic diseases: insights for clinical practice

M Nishide, H Shimagami, A Kumanogoh - Nature Reviews Immunology, 2024 - nature.com
Since the advent of single-cell RNA sequencing (scRNA-seq) methodology, single-cell
analysis has become a powerful tool for exploration of cellular networks and dysregulated …

Spatial omics advances for in situ RNA biology

J Ren, S Luo, H Shi, X Wang - Molecular Cell, 2024 - cell.com
Spatial regulation of RNA plays a critical role in gene expression regulation and cellular
function. Understanding spatially resolved RNA dynamics and translation is vital for bringing …

Decoding protein–RNA interactions using CLIP-based methodologies

JS **ang, DM Schafer, KL Rothamel… - Nature Reviews Genetics, 2024 - nature.com
Protein–RNA interactions are central to all RNA processing events, with pivotal roles in the
regulation of gene expression and cellular functions. Dysregulation of these interactions has …