Role of non-coding sequence variants in cancer

E Khurana, Y Fu, D Chakravarty, F Demichelis… - Nature Reviews …, 2016 - nature.com
Patients with cancer carry somatic sequence variants in their tumour in addition to the
germline variants in their inherited genome. Although variants in protein-coding regions …

The genomic landscape of cutaneous melanoma

T Zhang, K Dutton‐Regester, KM Brown… - Pigment cell & …, 2016 - Wiley Online Library
Somatic mutation analysis of melanoma has been performed at the single gene level
extensively over the past several decades. This has provided considerable insight into the …

Differential DNA repair underlies mutation hotspots at active promoters in cancer genomes

D Perera, RC Poulos, A Shah, D Beck, JE Pimanda… - Nature, 2016 - nature.com
Promoters are DNA sequences that have an essential role in controlling gene expression.
While recent whole cancer genome analyses have identified numerous hotspots of somatic …

Functional mutations form at CTCF-cohesin binding sites in melanoma due to uneven nucleotide excision repair across the motif

RC Poulos, JAI Thoms, YF Guan, A Unnikrishnan… - Cell reports, 2016 - cell.com
CTCF binding sites are frequently mutated in cancer, but how these mutations accumulate
and whether they broadly perturb CTCF binding are not well understood. Here, we report …

Molecular characterisation of cutaneous melanoma: creating a framework for targeted and immune therapies

S Rajkumar, IR Watson - British journal of cancer, 2016 - nature.com
Large-scale genomic analyses of cutaneous melanoma have revealed insights into the
aetiology and heterogeneity of this disease, as well as opportunities to further personalise …

A somatic reference standard for cancer genome sequencing

DW Craig, S Nasser, R Corbett, SK Chan, L Murray… - Scientific reports, 2016 - nature.com
Large-scale multiplexed identification of somatic alterations in cancer has become feasible
with next generation sequencing (NGS). However, calibration of NGS somatic analysis tools …

[HTML][HTML] Beyond the exome: the role of non-coding somatic mutations in cancer

SW Piraino, SJ Furney - Annals of oncology, 2016 - Elsevier
The comprehensive identification of mutations contributing to the development of cancer is a
priority of large cancer sequencing projects. To date, most studies have scrutinized …

Identification of coding and non-coding mutational hotspots in cancer genomes

SW Piraino, SJ Furney - BMC genomics, 2017 - Springer
Background The identification of mutations that play a causal role in tumour development, so
called “driver” mutations, is of critical importance for understanding how cancers form and …

Transcriptional networks in acute myeloid leukemia

JAI Thoms, D Beck, JE Pimanda - Genes, Chromosomes and …, 2019 - Wiley Online Library
Acute myeloid leukemia (AML) is a complex disease characterized by a diverse range of
recurrent molecular aberrations that occur in many different combinations. Components of …

Advances of DNase-seq for map** active gene regulatory elements across the genome in animals

A Chen, D Chen, Y Chen - Gene, 2018 - Elsevier
Expression of the eukaryotic genome is a highly complex and tightly regulated process, and
its regulation depends on interactions among cis-acting elements and transcription factors …