A roadmap for metagenomic enzyme discovery

SL Robinson, J Piel, S Sunagawa - Natural Product Reports, 2021 - pubs.rsc.org
Covering: up to 2021 Metagenomics has yielded massive amounts of sequencing data
offering a glimpse into the biosynthetic potential of the uncultivated microbial majority. While …

Whole-genome sequencing of bacterial pathogens: the future of nosocomial outbreak analysis

S Quainoo, JPM Coolen, SAFT van Hijum… - Clinical microbiology …, 2017 - journals.asm.org
Outbreaks of multidrug-resistant bacteria present a frequent threat to vulnerable patient
populations in hospitals around the world. Intensive care unit (ICU) patients are particularly …

The genetic and epigenetic landscape of the Arabidopsis centromeres

M Naish, M Alonge, P Wlodzimierz, AJ Tock… - Science, 2021 - science.org
INTRODUCTION The centromeres of eukaryotic chromosomes assemble the multiprotein
kinetochore complex and thereby position attachment to the spindle microtubules, allowing …

Cycles of satellite and transposon evolution in Arabidopsis centromeres

P Wlodzimierz, FA Rabanal, R Burns, M Naish… - Nature, 2023 - nature.com
Centromeres are critical for cell division, loading CENH3 or CENPA histone variant
nucleosomes, directing kinetochore formation and allowing chromosome segregation …

ASTRAL-II: coalescent-based species tree estimation with many hundreds of taxa and thousands of genes

S Mirarab, T Warnow - Bioinformatics, 2015 - academic.oup.com
Motivation: The estimation of species phylogenies requires multiple loci, since different loci
can have different trees due to incomplete lineage sorting, modeled by the multi-species …

Update on the classification of higher ranks in the phylum Actinobacteria

N Salam, JY Jiao, XT Zhang… - International journal of …, 2020 - microbiologyresearch.org
Genome analysis is one of the main criteria for description of new taxa. Availability of
genome sequences for all the actinobacteria with a valid nomenclature will, however …

The reduced genomes of Parcubacteria (OD1) contain signatures of a symbiotic lifestyle

WC Nelson, JC Stegen - Frontiers in microbiology, 2015 - frontiersin.org
Candidate phylum OD1 bacteria (also referred to as Parcubacteria) have been identified in a
broad range of anoxic environments through community survey analysis. Although none of …

A subfamily roadmap of the evolutionarily diverse glycoside hydrolase family 16 (GH16)

AH Viborg, N Terrapon, V Lombard, G Michel… - Journal of Biological …, 2019 - jbc.org
Glycoside hydrolase family (GH) 16 comprises a large and taxonomically diverse family of
glycosidases and transglycosidases that adopt a common β-jelly-roll fold and are active on a …

Synergistic bacterial compositions and methods of production and use thereof

MR Henn, G Von Maltzahn, AM D'onofrio… - US Patent …, 2015 - Google Patents
2014-04-08 Assigned to Seres Health, Inc. reassignment Seres Health, Inc. ASSIGNMENT
OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: AFEYAN …

Compositions and methods

G McKenzie, MJL McKenzie, DN Cook, M Vulic… - US Patent …, 2015 - Google Patents
2014-04-04 Assigned to Seres Health, Inc. reassignment Seres Health, Inc. ASSIGNMENT
OF ASSIGNORS INTEREST (SEE DOCUMENT FOR DETAILS). Assignors: GOODMAN …