Use of nuclear genes for phylogeny reconstruction in plants
Molecular data have had a profound impact on the field of plant systematics, and the
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …
application of DNA-sequence data to phylogenetic problems is now routine. The majority of …
Practical considerations for plant phylogenomics
The past decade has seen a major breakthrough in our ability to easily and inexpensively
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
sequence genome‐scale data from diverse lineages. The development of high‐throughput …
Gaps as characters in sequence-based phylogenetic analyses
In the analysis of sequence-based data matrices, the use of different methods of treating
gaps has been demonstrated to in? fluence the resulting phylogenetic hypothe? ses (eg …
gaps has been demonstrated to in? fluence the resulting phylogenetic hypothe? ses (eg …
Utility of low-copy nuclear gene sequences in plant phylogenetics
T Sang - Critical reviews in Biochemistry and molecular biology, 2002 - Taylor & Francis
Low-copy nuclear genes in plants are a rich source of phylogenetic information. They hold a
great potential to improve the robustness of phylogenetic reconstruction at all taxonomic …
great potential to improve the robustness of phylogenetic reconstruction at all taxonomic …
GapCoder automates the use of indel characters in phylogenetic analysis
ND Young, J Healy - BMC bioinformatics, 2003 - Springer
Background Several ways of incorporating indels into phylogenetic analysis have been
suggested. Simple indel coding has two strengths:(1) biological realism and (2) efficiency of …
suggested. Simple indel coding has two strengths:(1) biological realism and (2) efficiency of …
Toward a global phylogeny of the Brassicaceae
The Brassicaceae is a large plant family (338 genera and 3,700 species) of major scientific
and economic importance. The taxonomy of this group has been plagued by convergent …
and economic importance. The taxonomy of this group has been plagued by convergent …
Using nuclear gene data for plant phylogenetics: Progress and prospects II. Next‐gen approaches
Single and low copy nuclear genes offer a larger number of, and more rapidly evolving,
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …
characters than the chloroplast and nuclear ribosomal gene sequences that have dominated …
Patterns and causes of incongruence between plastid and nuclear Senecioneae (Asteraceae) phylogenies
One of the longstanding questions in phylogenetic systematics is how to address
incongruence among phylogenies obtained from multiple markers and how to determine the …
incongruence among phylogenies obtained from multiple markers and how to determine the …
Nuclear ribosomal spacer regions in plant phylogenetics: problems and prospects
P Poczai, J Hyvönen - Molecular biology reports, 2010 - Springer
The nuclear ribosomal locus coding for the large subunit is represented in tandem arrays in
the plant genome. These consecutive gene blocks, consisting of several regions, are widely …
the plant genome. These consecutive gene blocks, consisting of several regions, are widely …
Rapid speciation and the evolution of hummingbird pollination in neotropical Costus subgenus Costus (Costaceae): evidence from nrDNA ITS and ETS sequences
We estimate phylogenetic relationships and the biogeographic and pollination history of
Costus subgenus Costus (Costaceae) using sequence data from the internal and external …
Costus subgenus Costus (Costaceae) using sequence data from the internal and external …