Implementation options for DNA-based identification into ecological status assessment under the European Water Framework Directive

D Hering, A Borja, JI Jones, D Pont, P Boets… - Water research, 2018 - Elsevier
Assessment of ecological status for the European Water Framework Directive (WFD) is
based on “Biological Quality Elements”(BQEs), namely phytoplankton, benthic flora, benthic …

Building essential biodiversity variables (EBV s) of species distribution and abundance at a global scale

WD Kissling, JA Ahumada, A Bowser… - Biological …, 2018 - Wiley Online Library
Much biodiversity data is collected worldwide, but it remains challenging to assemble the
scattered knowledge for assessing biodiversity status and trends. The concept of E ssential …

[LIBRO][B] Environmental DNA: For biodiversity research and monitoring

P Taberlet, A Bonin, L Zinger, E Coissac - 2018 - books.google.com
Environmental DNA (eDNA) refers to DNA that can be extracted from environmental
samples (such as soil, water, feces, or air) without the prior isolation of any target organism …

Improved data analysis for the MinION nanopore sequencer

M Jain, IT Fiddes, KH Miga, HE Olsen, B Paten… - Nature …, 2015 - nature.com
Speed, single-base sensitivity and long read lengths make nanopores a promising
technology for high-throughput sequencing. We evaluated and optimized the performance of …

Quality assessment of the blue mussel (Mytilus edulis): Comparison between commercial and wild types

B De Witte, L Devriese, K Bekaert, S Hoffman… - Marine pollution …, 2014 - Elsevier
This study compared species identity, microplastics, chemical and microbial contamination
between consumption mussels and wild type mussels, collected at Belgian department …

DNA barcoding and metabarcoding of standardized samples reveal patterns of marine benthic diversity

M Leray, N Knowlton - … of the National Academy of Sciences, 2015 - National Acad Sciences
Documenting the diversity of marine life is challenging because many species are cryptic,
small, and rare, and belong to poorly known groups. New sequencing technologies …

Rapid ecosystem-scale consequences of acute deoxygenation on a Caribbean coral reef

MD Johnson, JJ Scott, M Leray, N Lucey… - Nature …, 2021 - nature.com
Loss of oxygen in the global ocean is accelerating due to climate change and
eutrophication, but how acute deoxygenation events affect tropical marine ecosystems …

Next-generation sequencing (NGS) for assessment of microbial water quality: current progress, challenges, and future opportunities

BF Tan, C Ng, JP Nshimyimana, LL Loh… - Frontiers in …, 2015 - frontiersin.org
Water quality is an emergent property of a complex system comprised of interacting
microbial populations and introduced microbial and chemical contaminants. Studies …

Monitoring and managing microbes in aquaculture–Towards a sustainable industry

M Bentzon‐Tilia, EC Sonnenschein… - Microbial …, 2016 - Wiley Online Library
Microorganisms are of great importance to aquaculture where they occur naturally, and can
be added artificially, fulfilling different roles. They recycle nutrients, degrade organic matter …

Overview of integrative assessment of marine systems: the ecosystem approach in practice

A Borja, M Elliott, JH Andersen, T Berg… - Frontiers in Marine …, 2016 - frontiersin.org
Traditional and emerging human activities are increasingly putting pressures on marine
ecosystems and impacting their ability to sustain ecological and human communities. To …