The oral microbiome: diversity, biogeography and human health

JL Baker, JL Mark Welch, KM Kauffman… - Nature Reviews …, 2024 - nature.com
The human oral microbiota is highly diverse and has a complex ecology, comprising
bacteria, microeukaryotes, archaea and viruses. These communities have elaborate and …

The oral microbiota: community composition, influencing factors, pathogenesis, and interventions

X Li, Y Liu, X Yang, C Li, Z Song - Frontiers in microbiology, 2022 - frontiersin.org
The human oral cavity provides a habitat for oral microbial communities. The complexity of
its anatomical structure, its connectivity to the outside, and its moist environment contribute …

Correlation and association analyses in microbiome study integrating multiomics in health and disease

Y **a - Progress in molecular biology and translational …, 2020 - Elsevier
Correlation and association analyses are one of the most widely used statistical methods in
research fields, including microbiome and integrative multiomics studies. Correlation and …

Oral microbiome and dental caries development

JS Zhang, CH Chu, OY Yu - Dentistry journal, 2022 - mdpi.com
Dental caries remains the most prevalent oral disease worldwide. The development of
dental caries is highly associated with the microbiota in the oral cavity. Microbiological …

Visualizing'omic feature rankings and log-ratios using Qurro

MW Fedarko, C Martino, JT Morton… - NAR genomics and …, 2020 - academic.oup.com
Many tools for dealing with compositional ''omics' data produce feature-wise values that can
be ranked in order to describe features' associations with some sort of variation. These …

Current state and challenges of the global outcomes of dental caries research in the meta-omics era

DG Moussa, P Ahmad, TA Mansour… - Frontiers in Cellular and …, 2022 - frontiersin.org
Despite significant healthcare advances in the 21st century, the exact etiology of dental
caries remains unsolved. The past two decades have witnessed a tremendous growth in our …

Metagenomics: An effective approach for exploring microbial diversity and functions

NN Nam, HDK Do, KT Loan Trinh, NY Lee - Foods, 2023 - mdpi.com
Various fields have been identified in the “omics” era, such as genomics, proteomics,
transcriptomics, metabolomics, phenomics, and metagenomics. Among these …

The oral host–microbial interactome: an ecological chronometer of health?

M Freire, KE Nelson, A Edlund - Trends in Microbiology, 2021 - cell.com
An increasing number of studies reveal that host–microbial interactome networks are
coordinated, impacting human health and disease. Recently, several lines of evidence have …

The economical lifestyle of CPR bacteria in groundwater allows little preference for environmental drivers

NM Chaudhari, WA Overholt… - Environmental …, 2021 - Springer
Abstract Background The highly diverse Cand. Patescibacteria are predicted to have
minimal biosynthetic and metabolic pathways, which hinders understanding of how their …

Candidate phyla radiation, an underappreciated division of the human microbiome, and its impact on health and disease

S Naud, A Ibrahim, C Valles, M Maatouk… - Clinical Microbiology …, 2022 - Am Soc Microbiol
Candidate phyla radiation (CPR) is an emerging division of the bacterial domain within the
human microbiota. Still poorly known, these microorganisms were first described in the …