A survey of methods for 3D histology reconstruction

J Pichat, JE Iglesias, T Yousry, S Ourselin… - Medical image analysis, 2018 - Elsevier
Histology permits the observation of otherwise invisible structures of the internal topography
of a specimen. Although it enables the investigation of tissues at a cellular level, it is invasive …

Three-dimensional histologic, immunohistochemical, and multiplex immunofluorescence analyses of dynamic vessel co-option of spread through air spaces in lung …

Y Yagi, RG Aly, K Tabata, A Barlas, N Rekhtman… - Journal of Thoracic …, 2020 - Elsevier
Introduction Spread through air spaces (STAS) is a method of invasion in lung
adenocarcinoma and is associated with tumor recurrence and poor survival. The spatial …

A correlative approach for combining microCT, light and transmission electron microscopy in a single 3D scenario

S Handschuh, N Baeumler, T Schwaha… - Frontiers in …, 2013 - Springer
Background In biomedical research, a huge variety of different techniques is currently
available for the structural examination of small specimens, including conventional light …

Synchrotron inline phase contrast µCT enables detailed virtual histology of embedded soft-tissue samples with and without staining

M Saccomano, J Albers, G Tromba… - Journal of …, 2018 - journals.iucr.org
Synchrotron radiation micro-computed tomography (SRµCT) based virtual histology, in
combination with dedicated ex vivo staining protocols and/or phase contrast, is an emerging …

A quality optimization approach to image Achilles tendon microstructure by phase-contrast enhanced synchrotron micro-tomography

M Pierantoni, I Silva Barreto, M Hammerman… - Scientific reports, 2021 - nature.com
Achilles tendons are mechanosensitive, and their complex hierarchical structure is in part
the result of the mechanical stimulation conveyed by the muscles. To fully understand how …

A 3D Interactive Model and Atlas of the Jaw Musculature of Alligator mississippiensis

CM Holliday, HP Tsai, RJ Skiljan, ID George… - PLoS One, 2013 - journals.plos.org
Modern imaging and dissemination methods enable morphologists to share complex, three-
dimensional (3D) data in ways not previously possible. Here we present a 3D interactive …

A role of three-dimensional (3D)-reconstruction in the classification of lung adenocarcinoma

ML Onozato, VE Klepeis, Y Yagi… - Analytical Cellular …, 2012 - content.iospress.com
Background: Three-dimensional (3D)-reconstruction from paraffin embedded sections has
been considered laborious and time-consuming. However, the high-resolution images of …

[HTML][HTML] Three-dimensional portable document format (3D PDF) in clinical communication and biomedical sciences: Systematic review of applications, tools, and …

A Newe, L Becker - JMIR Medical Informatics, 2018 - medinform.jmir.org
Background: The Portable Document Format (PDF) is the standard file format for the
communication of biomedical information via the internet and for electronic scholarly …

Microscopic dual‐energy CT (microDECT): a flexible tool for multichannel ex vivo 3D imaging of biological specimens

S Handschuh, CJ Beisser, B Ruthensteiner… - Journal of …, 2017 - Wiley Online Library
Dual‐energy computed tomography (DECT) uses two different x‐ray energy spectra in order
to differentiate between tissues, materials or elements in a single sample or patient. DECT is …

A simple setup for episcopic microtomy and a digital image processing workflow to acquire high-quality volume data and 3D surface models of small vertebrates

K Engelkes, F Friedrich, JU Hammel, A Haas - Zoomorphology, 2018 - Springer
The use of volume data and digital three-dimensional (3D) surface models in biology has
increased quickly and steadily. Various methods are available to acquire 3D data, among …