How water's properties are encoded in its molecular structure and energies
How are water's material properties encoded within the structure of the water molecule? This
is pertinent to understanding Earth's living systems, its materials, its geochemistry and …
is pertinent to understanding Earth's living systems, its materials, its geochemistry and …
Arginine “magic”: Guanidinium like-charge ion pairing from aqueous salts to cell penetrating peptides
It is a textbook knowledge that charges of the same polarity repel each other. For two
monovalent ions in the gas phase at a close contact this repulsive interaction amounts to …
monovalent ions in the gas phase at a close contact this repulsive interaction amounts to …
Determination of alkali and halide monovalent ion parameters for use in explicitly solvated biomolecular simulations
Alkali (Li+, Na+, K+, Rb+, and Cs+) and halide (F−, Cl−, Br−, and I−) ions play an important
role in many biological phenomena, roles that range from stabilization of biomolecular …
role in many biological phenomena, roles that range from stabilization of biomolecular …
A generalized reaction field method for molecular dynamics simulations
IG Tironi, R Sperb, PE Smith… - The Journal of chemical …, 1995 - pubs.aip.org
Molecular dynamics simulations of ionic systems require the inclusion of long‐range
electrostatic forces. We propose an expression for the long‐range electrostatic forces based …
electrostatic forces. We propose an expression for the long‐range electrostatic forces based …
Computer simulations of NaCl association in polarizable water
DE Smith, LX Dang - The Journal of Chemical Physics, 1994 - pubs.aip.org
Classical molecular dynamics computer simulations have been used to investigate the
thermodynamics and kinetics of sodium chloride association in polarizable water. The …
thermodynamics and kinetics of sodium chloride association in polarizable water. The …
Finite representation of an infinite bulk system: Solvent boundary potential for computer simulations
D Beglov, B Roux - The Journal of chemical physics, 1994 - pubs.aip.org
An approach is developed to obtain statistical properties similar to those of an infinite bulk
system from computer simulations of a finite cluster. A rigorous theoretical formulation is …
system from computer simulations of a finite cluster. A rigorous theoretical formulation is …
[BOOK][B] Molecular driving forces: statistical thermodynamics in biology, chemistry, physics, and nanoscience
K Dill, S Bromberg - 2010 - taylorfrancis.com
Molecular Driving Forces, Second Edition E-book is an introductory statistical
thermodynamics text that describes the principles and forces that drive chemical and …
thermodynamics text that describes the principles and forces that drive chemical and …
Implicit solvent models
B Roux, T Simonson - Biophysical chemistry, 1999 - Elsevier
Implicit solvent models for biomolecular simulations are reviewed and their underlying
statistical mechanical basis is discussed. The fundamental quantity that implicit models seek …
statistical mechanical basis is discussed. The fundamental quantity that implicit models seek …
Self-consistent description of a metal–water interface by the Kohn–Sham density functional theory and the three-dimensional reference interaction site model
A Kovalenko, F Hirata - The Journal of chemical physics, 1999 - pubs.aip.org
We have developed a self-consistent description of an interface between a metal and a
molecular liquid by combination of the density functional theory in the Kohn–Sham …
molecular liquid by combination of the density functional theory in the Kohn–Sham …
An integral equation to describe the solvation of polar molecules in liquid water
D Beglov, B Roux - The journal of physical chemistry B, 1997 - ACS Publications
We developed and implemented a statistical mechanical integral equation theory to
describe the hydration structure of complex molecules. The theory, which is an extension of …
describe the hydration structure of complex molecules. The theory, which is an extension of …