The influence of a priori grou** on inference of genetic clusters: simulation study and literature review of the DAPC method

JM Miller, CI Cullingham, RM Peery - Heredity, 2020 - nature.com
Inference of genetic clusters is a key aim of population genetics, sparking development of
numerous analytical methods. Within these, there is a conceptual divide between finding de …

Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

genodive version 3.0: Easy‐to‐use software for the analysis of genetic data of diploids and polyploids

PG Meirmans - Molecular Ecology Resources, 2020 - Wiley Online Library
Abstract genodive version 3.0 is a user‐friendly program for the analysis of population
genetic data. This version presents a major update from the previous version and now offers …

dartr: An r package to facilitate analysis of SNP data generated from reduced representation genome sequencing

B Gruber, PJ Unmack, OF Berry… - Molecular ecology …, 2018 - Wiley Online Library
Although vast technological advances have been made and genetic software packages are
growing in number, it is not a trivial task to analyse SNP data. We announce a new r …

pophelper: an R package and web app to analyse and visualize population structure

RM Francis - Molecular ecology resources, 2017 - Wiley Online Library
The pophelper r package and web app are software tools to aid in population structure
analyses. They can be used for the analyses and visualization of output generated from …

genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

ROD Peakall, PE Smouse - Molecular ecology notes, 2006 - Wiley Online Library
Abstract genalex is a user‐friendly cross‐platform package that runs within Microsoft Excel,
enabling population genetic analyses of codominant, haploid and binary data. Allele …

Conceptual issues in local adaptation

TJ Kawecki, D Ebert - Ecology letters, 2004 - Wiley Online Library
Studies of local adaptation provide important insights into the power of natural selection
relative to gene flow and other evolutionary forces. They are a paradigm for testing …

What can genetics tell us about population connectivity?

WH Lowe, FW Allendorf - Molecular ecology, 2010 - Wiley Online Library
Genetic data are often used to assess 'population connectivity'because it is difficult to
measure dispersal directly at large spatial scales. Genetic connectivity, however, depends …

Microsatellite null alleles and estimation of population differentiation

MP Chapuis, A Estoup - Molecular biology and evolution, 2007 - academic.oup.com
Microsatellite null alleles are commonly encountered in population genetics studies, yet little
is known about their impact on the estimation of population differentiation. Computer …

Landscape genetics in a changing world: disentangling historical and contemporary influences and inferring change

CW Epps, N Keyghobadi - Molecular ecology, 2015 - Wiley Online Library
Landscape genetics seeks to determine the effect of landscape features on gene flow and
genetic structure. Often, such analyses are intended to inform conservation and …