Principles of protein folding—a perspective from simple exact models
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …
explored in computer simulations of simple exact lattice models. These models represent …
[หนังสือ][B] Dynamics of complex systems
Y Bar-Yam - 2019 - books.google.com
Page 1 Dynamics of Complex Systems Yaneer Bar-Yam ROUTLEDGE R Page 2 Dynamics of
Complex Systems Page 3 Studies in Nonlinearity Series Editor: Robert L. Devaney Ralph …
Complex Systems Page 3 Studies in Nonlinearity Series Editor: Robert L. Devaney Ralph …
A review of Monte Carlo simulations of polymers with PERM
HP Hsu, P Grassberger - Journal of statistical physics, 2011 - Springer
In this review, we describe applications of the pruned-enriched Rosenbluth method (PERM),
a sequential Monte Carlo algorithm with resampling, to various problems in polymer physics …
a sequential Monte Carlo algorithm with resampling, to various problems in polymer physics …
Multiple epistemological coherences in an eighth-grade discussion of the rock cycle
S Rosenberg, D Hammer, J Phelan - The Journal of the Learning …, 2006 - Taylor & Francis
Research on personal epistemologies (Hofer & Pintrich, 2002) has mostly conceptualized
them as stable beliefs or stages of development. On these views, researchers characterize …
them as stable beliefs or stages of development. On these views, researchers characterize …
Bilinear optimization of protein structure prediction: An exact approach via AB off-lattice model
Protein structure prediction (PSP) remains a central challenge in computational biology due
to its inherent complexity and high dimensionality. While numerous heuristic approaches …
to its inherent complexity and high dimensionality. While numerous heuristic approaches …
Gyration tensor based analysis of the shapes of polymer chains in an attractive spherical cage
H Arkın, W Janke - The Journal of chemical physics, 2013 - pubs.aip.org
In a recent computational study, we found highly structured conformations for the polymer-
attractive sphere model system. Those conformations are of highly ordered spherical shape …
attractive sphere model system. Those conformations are of highly ordered spherical shape …
Molecular modeling of proteins and mathematical prediction of protein structure
A Neumaier - SIAM review, 1997 - SIAM
This paper discusses the mathematical formulation of and solution attempts for the so-called
protein folding problem. The static aspect is concerned with how to predict the folded (native …
protein folding problem. The static aspect is concerned with how to predict the folded (native …
Statistical-temperature Monte Carlo and molecular dynamics algorithms
A simulation method is presented that achieves a flat energy distribution by updating the
statistical temperature instead of the density of states in Wang-Landau sampling. A novel …
statistical temperature instead of the density of states in Wang-Landau sampling. A novel …
[หนังสือ][B] Thermodynamics and statistical mechanics of macromolecular systems
M Bachmann - 2014 - books.google.com
The structural mechanics of proteins that fold into functional shapes, polymers that
aggregate and form clusters, and organic macromolecules that bind to inorganic matter can …
aggregate and form clusters, and organic macromolecules that bind to inorganic matter can …
Collective aspects of protein folding illustrated by a toy model
FH Stillinger, T Head-Gordon - Physical review E, 1995 - APS
A simple toy model for polypeptides serves as a testbed to illuminate some nonlocal, or
collective, aspects of protein folding phenomena. The model is two dimensional and has …
collective, aspects of protein folding phenomena. The model is two dimensional and has …