Chemoton 2.0: autonomous exploration of chemical reaction networks
Fueled by advances in hardware and algorithm design, large-scale automated explorations
of chemical reaction space have become possible. Here, we present our approach to an …
of chemical reaction space have become possible. Here, we present our approach to an …
Restricted-variance constrained, reaction path, and transition state molecular optimizations using gradient-enhanced kriging
I Fdez. Galván, G Raggi, R Lindh - Journal of Chemical Theory …, 2020 - ACS Publications
Gaussian process regression has recently been explored as an alternative to standard
surrogate models in molecular equilibrium geometry optimization. In particular, the gradient …
surrogate models in molecular equilibrium geometry optimization. In particular, the gradient …
Locating saddle points using gradient extremals on manifolds adaptively revealed as point clouds
A Georgiou, H Vandecasteele… - … Journal of Nonlinear …, 2023 - pubs.aip.org
Steady states are invaluable in the study of dynamical systems. High-dimensional dynamical
systems, due to separation of time scales, often evolve toward a lower dimensional manifold …
systems, due to separation of time scales, often evolve toward a lower dimensional manifold …
A growing string method for the reaction pathway defined by a Newton trajectory
W Quapp - The Journal of chemical physics, 2005 - pubs.aip.org
The reaction path is an important concept of theoretical chemistry. We use a projection
operator for the following of the Newton trajectory (NT) along the reaction valley of the …
operator for the following of the Newton trajectory (NT) along the reaction valley of the …
A contribution to a theory of mechanochemical pathways by means of Newton trajectories
The reaction path is a central subject in theoretical chemistry. It is a pathway imagined on
the potential energy surface (PES). It provides a one-dimensional description of a chemical …
the potential energy surface (PES). It provides a one-dimensional description of a chemical …
Toward a theory of mechanochemistry: Simple models from the very beginnings
A core idea in the context of mechanochemistry is that applying an external tensile force
along a reaction coordinate should enhance the chemical reaction of interest. Here, we …
along a reaction coordinate should enhance the chemical reaction of interest. Here, we …
Analysis of the Acting Forces in a Theory of Catalysis and Mechanochemistry
The theoretical description of a chemical process resulting from the application of
mechanical or catalytical stress to a molecule is performed by the generation of an effective …
mechanical or catalytical stress to a molecule is performed by the generation of an effective …
Variational nature, integration, and properties of Newton reaction path
The distinguished coordinate path and the reduced gradient following path or its equivalent
formulation, the Newton trajectory, are analyzed and unified using the theory of calculus of …
formulation, the Newton trajectory, are analyzed and unified using the theory of calculus of …
The variational structure of gradient extremals
The gradient extremals can be taken as a representation of reaction paths. We prove that
this type of curve possesses a variational nature. We report the conditions such that these …
this type of curve possesses a variational nature. We report the conditions such that these …
Analysis of the Valley-Ridge inflection points through the partitioning technique of the Hessian eigenvalue equation
Abstract The Valley-Ridge inflection (VRI) points are related to the branching of a reaction
valley or reaction channel. These points are a special class of points of the potential energy …
valley or reaction channel. These points are a special class of points of the potential energy …