Chemoton 2.0: autonomous exploration of chemical reaction networks

JP Unsleber, SA Grimmel, M Reiher - Journal of Chemical Theory …, 2022 - ACS Publications
Fueled by advances in hardware and algorithm design, large-scale automated explorations
of chemical reaction space have become possible. Here, we present our approach to an …

Restricted-variance constrained, reaction path, and transition state molecular optimizations using gradient-enhanced kriging

I Fdez. Galván, G Raggi, R Lindh - Journal of Chemical Theory …, 2020 - ACS Publications
Gaussian process regression has recently been explored as an alternative to standard
surrogate models in molecular equilibrium geometry optimization. In particular, the gradient …

Locating saddle points using gradient extremals on manifolds adaptively revealed as point clouds

A Georgiou, H Vandecasteele… - … Journal of Nonlinear …, 2023 - pubs.aip.org
Steady states are invaluable in the study of dynamical systems. High-dimensional dynamical
systems, due to separation of time scales, often evolve toward a lower dimensional manifold …

A growing string method for the reaction pathway defined by a Newton trajectory

W Quapp - The Journal of chemical physics, 2005 - pubs.aip.org
The reaction path is an important concept of theoretical chemistry. We use a projection
operator for the following of the Newton trajectory (NT) along the reaction valley of the …

A contribution to a theory of mechanochemical pathways by means of Newton trajectories

W Quapp, JM Bofill - Theoretical Chemistry Accounts, 2016 - Springer
The reaction path is a central subject in theoretical chemistry. It is a pathway imagined on
the potential energy surface (PES). It provides a one-dimensional description of a chemical …

Toward a theory of mechanochemistry: Simple models from the very beginnings

W Quapp, JM Bofill… - International Journal of …, 2018 - Wiley Online Library
A core idea in the context of mechanochemistry is that applying an external tensile force
along a reaction coordinate should enhance the chemical reaction of interest. Here, we …

Analysis of the Acting Forces in a Theory of Catalysis and Mechanochemistry

W Quapp, JM Bofill, J Ribas-Ariño - The Journal of Physical …, 2017 - ACS Publications
The theoretical description of a chemical process resulting from the application of
mechanical or catalytical stress to a molecule is performed by the generation of an effective …

Variational nature, integration, and properties of Newton reaction path

JM Bofill, W Quapp - The Journal of chemical physics, 2011 - pubs.aip.org
The distinguished coordinate path and the reduced gradient following path or its equivalent
formulation, the Newton trajectory, are analyzed and unified using the theory of calculus of …

The variational structure of gradient extremals

JM Bofill, W Quapp, M Caballero - Journal of Chemical Theory and …, 2012 - ACS Publications
The gradient extremals can be taken as a representation of reaction paths. We prove that
this type of curve possesses a variational nature. We report the conditions such that these …

Analysis of the Valley-Ridge inflection points through the partitioning technique of the Hessian eigenvalue equation

JM Bofill, W Quapp - Journal of Mathematical Chemistry, 2013 - Springer
Abstract The Valley-Ridge inflection (VRI) points are related to the branching of a reaction
valley or reaction channel. These points are a special class of points of the potential energy …