[HTML][HTML] Implications of hydrogen sulfide in colorectal cancer: Mechanistic insights and diagnostic and therapeutic strategies

H Lin, Y Yu, L Zhu, N Lai, L Zhang, Y Guo, X Lin… - Redox biology, 2023 - Elsevier
Hydrogen sulfide (H 2 S) is an important signaling molecule in colorectal cancer (CRC). It is
produced in the colon by the catalytic synthesis of the colonocytes' enzymatic systems and …

The life sulfuric: microbial ecology of sulfur cycling in marine sediments

K Wasmund, M Mußmann, A Loy - Environmental microbiology …, 2017 - Wiley Online Library
Almost the entire seafloor is covered with sediments that can be more than 10 000 m thick
and represent a vast microbial ecosystem that is a major component of Earth's element and …

iML1515, a knowledgebase that computes Escherichia coli traits

JM Monk, CJ Lloyd, E Brunk, N Mih, A Sastry… - Nature …, 2017 - nature.com
Figure 1 iML1515 genome-scale reconstruction.(a) The iML1515 model contains 1,515
open reading frames that encode enzymes that catalyze 2,719 reactions involving 1,192 …

The EcoCyc database: reflecting new knowledge about Escherichia coli K-12

IM Keseler, A Mackie, A Santos-Zavaleta… - Nucleic acids …, 2017 - academic.oup.com
EcoCyc (EcoCyc. org) is a freely accessible, comprehensive database that collects and
summarizes experimental data for Escherichia coli K-12, the best-studied bacterial model …

Antigen receptor repertoire profiling from RNA-seq data

DA Bolotin, S Poslavsky, AN Davydov, FE Frenkel… - Nature …, 2017 - nature.com
To the Editor: Somatic recombination and accumulation of mutations in VDJ segments result
in vast heterogeneity of T-cell receptor (TCR) and immunoglobulin repertoires1, 2. High …

Cryptic carbon and sulfur cycling between surface ocean plankton

BP Durham, S Sharma, H Luo, CB Smith… - Proceedings of the …, 2015 - pnas.org
About half the carbon fixed by phytoplankton in the ocean is taken up and metabolized by
marine bacteria, a transfer that is mediated through the seawater dissolved organic carbon …

Deciphering ocean carbon in a changing world

MA Moran, EB Kujawinski, A Stubbins… - Proceedings of the …, 2016 - pnas.org
Dissolved organic matter (DOM) in the oceans is one of the largest pools of reduced carbon
on Earth, comparable in size to the atmospheric CO2 reservoir. A vast number of …

Sulfur metabolites in the pelagic ocean

MA Moran, BP Durham - Nature Reviews Microbiology, 2019 - nature.com
Marine microorganisms play crucial roles in Earth's element cycles through the production
and consumption of organic matter. One of the elements whose fate is governed by …

A glycyl radical enzyme enables hydrogen sulfide production by the human intestinal bacterium Bilophila wadsworthia

SC Peck, K Denger, A Burrichter, SM Irwin… - Proceedings of the …, 2019 - pnas.org
Hydrogen sulfide (H2S) production in the intestinal microbiota has many contributions to
human health and disease. An important source of H2S in the human gut is anaerobic …

Sulfonate-based networks between eukaryotic phytoplankton and heterotrophic bacteria in the surface ocean

BP Durham, AK Boysen, LT Carlson… - Nature …, 2019 - nature.com
In the surface ocean, phytoplankton transform inorganic substrates into organic matter that
fuels the activity of heterotrophic microorganisms, creating intricate metabolic networks that …