Challenges in analysis and interpretation of microsatellite data for population genetic studies

AI Putman, I Carbone - Ecology and evolution, 2014 - Wiley Online Library
Advancing technologies have facilitated the ever‐widening application of genetic markers
such as microsatellites into new systems and research questions in biology. In light of the …

Genoty**‐by‐sequencing of genome‐wide microsatellite loci reveals fine‐scale harvest composition in a coastal Atlantic salmon fishery

IR Bradbury, BF Wringe, B Watson… - Evolutionary …, 2018 - Wiley Online Library
Individual assignment and genetic mixture analysis are commonly utilized in contemporary
wildlife and fisheries management. Although microsatellite loci provide unparalleled …

When can noninvasive samples provide sufficient information in conservation genetics studies?

O Smith, J Wang - Molecular Ecology Resources, 2014 - Wiley Online Library
Noninvasive sampling, of faeces and hair for example, has enabled many genetic studies of
wildlife populations. However, two prevailing problems common to these studies are small …

Discovery of novel variants in genoty** arrays improves genotype retention and reduces ascertainment bias

JP Didion, H Yang, K Sheppard, CP Fu, L McMillan… - BMC genomics, 2012 - Springer
Background High-density genoty** arrays that measure hybridization of genomic DNA
fragments to allele-specific oligonucleotide probes are widely used to genotype single …

Identification and evaluation of a core microsatellite panel for use in white-tailed deer (Odocoileus virginianus)

WL Miller, J Edson, P Pietrandrea, C Miller-Butterworth… - BMC genetics, 2019 - Springer
Background Microsatellite loci have been used extensively over the past two decades to
study the genetic characteristics of non-model species. The ease of microsatellite …

A resurrection experiment finds evidence of both reduced genetic diversity and potential adaptive evolution in the agricultural weed Ipomoea purpurea

A Kuester, A Wilson, SM Chang… - Molecular ecology, 2016 - Wiley Online Library
Despite the negative economic and ecological impact of weeds, relatively little is known
about the evolutionary mechanisms that influence their persistence in agricultural fields …

Genetic assessment of environmental features that influence deer dispersal: implications for prion-infected populations

AC Kelly, NE Mateus-Pinilla, W Brown, MO Ruiz… - Population …, 2014 - Springer
The landscape can influence host dispersal and density, which in turn, affect infectious
disease transmission, spread, and persistence. Understanding how the landscape …

Single nucleotide polymorphisms for DNA ty** in the domestic horse

HM Holl, J Vanhnasy, RE Everts… - Animal …, 2017 - Wiley Online Library
Genetic markers are important resources for individual identification and parentage
assessment. Although short tandem repeats (STR s) have been the traditional DNA marker …

Imputation of microsatellite alleles from dense SNP genotypes for parental verification

M McClure, T Sonstegard, G Wiggans… - Frontiers in …, 2012 - frontiersin.org
Microsatellite (MS) markers have recently been used for parental verification and are still the
international standard despite higher cost, error rate, and turnaround time compared with …

Identification of the varietal origin of processed loose-leaf tea based on analysis of a single leaf by SNP nanofluidic array

W Fang, LW Meinhardt, H Tan, L Zhou, S Mischke… - The Crop Journal, 2016 - Elsevier
Tea is an important cash crop, representing a $40 billion-a-year global market.
Differentiation of the tea market has resulted in increasing demand for tea products that are …