Prokaryotic taxonomy and nomenclature in the age of big sequence data

P Hugenholtz, M Chuvochina, A Oren… - the ISME …, 2021 - academic.oup.com
The classification of life forms into a hierarchical system (taxonomy) and the application of
names to this hierarchy (nomenclature) is at a turning point in microbiology. The …

Re-evaluating prokaryotic species

D Gevers, FM Cohan, JG Lawrence, BG Spratt… - Nature Reviews …, 2005 - nature.com
There is no widely accepted concept of species for prokaryotes, and assignment of isolates
to species is based on measures of phenotypic or genome similarity. The current methods …

Use of 16S rRNA and rpoB Genes as Molecular Markers for Microbial Ecology Studies

RJ Case, Y Boucher, I Dahllöf… - Applied and …, 2007 - Am Soc Microbiol
Several characteristics of the 16S rRNA gene, such as its essential function, ubiquity, and
evolutionary properties, have allowed it to become the most commonly used molecular …

Vibrio anguillarum as a fish pathogen: virulence factors, diagnosis and prevention

I Frans, CW Michiels, P Bossier… - Journal of fish …, 2011 - Wiley Online Library
Vibrio anguillarum, also known as Listonella anguillarum, is the causative agent of vibriosis,
a deadly haemorrhagic septicaemic disease affecting various marine and fresh/brackish …

Microbial genomic taxonomy.

CC Thompson, L Vidal, V Salazar… - Trends in the …, 2021 - cabidigitallibrary.org
This book chapter argues for an open-access catalogue of taxonomic descriptions with
prototypes; diagnostic tables; and links to culture collections, to genome and gene …

Bioinoculants—natural biological resources for sustainable plant production

S Maitra, M Brestic, P Bhadra, T Shankar, S Praharaj… - Microorganisms, 2021 - mdpi.com
Agricultural sustainability is of foremost importance for maintaining high food production.
Irresponsible resource use not only negatively affects agroecology, but also reduces the …

Vibrio spp.: Life Strategies, Ecology, and Risks in a Changing Environment

A Sampaio, V Silva, P Poeta, F Aonofriesei - Diversity, 2022 - mdpi.com
Vibrios are ubiquitous bacteria in aquatic systems, especially marine ones, and belong to
the Gammaproteobacteria class, the most diverse class of Gram-negative bacteria. The main …

Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekee** genes in the genus Ensifer (including former Sinorhizobium …

M Martens, P Dawyndt, R Coopman… - … of systematic and …, 2008 - microbiologyresearch.org
There is a need for easy, practical, reliable and robust techniques for the identification and
classification of bacterial isolates to the species level as alternatives to 16S rRNA gene …

Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp. nov.

T Sawabe, Y Ogura, Y Matsumura, G Feng… - Frontiers in …, 2013 - frontiersin.org
To date 142 species have been described in the Vibrionaceae family of bacteria, classified
into seven genera; Aliivibrio, Echinimonas, Enterovibrio, Grimontia, Photobacterium …

Seafood pathogens and information on antimicrobial resistance: A review

S Elbashir, S Parveen, J Schwarz, T Rippen… - Food …, 2018 - Elsevier
Seafood-borne diseases are a major public health hazard in the United States and
worldwide. Per capita, seafood consumption has increased globally during recent decades …