Analysis of the genetic loci of pigment pattern evolution in vertebrates

J Elkin, A Martin, V Courtier‐Orgogozo… - Biological …, 2023‏ - Wiley Online Library
Vertebrate pigmentation patterns are amongst the best characterised model systems for
studying the genetic basis of adaptive evolution. The wealth of available data on the genetic …

A compendium of genetic regulatory effects across pig tissues

J Teng, Y Gao, H Yin, Z Bai, S Liu, H Zeng… - Nature …, 2024‏ - nature.com
Abstract The Farm Animal Genotype-Tissue Expression (FarmGTEx) project has been
established to develop a public resource of genetic regulatory variants in livestock, which is …

Research progress and applications of genome‐wide association study in farm animals

X Tan, Z He, AG Fahey, G Zhao, R Liu… - Animal Research and …, 2023‏ - Wiley Online Library
Exploring the genetic loci underlying economic traits is foundational for innovation in
modern animal breeding technology. Genome‐wide association studies (GWAS) have been …

PigBiobank: a valuable resource for understanding genetic and biological mechanisms of diverse complex traits in pigs

H Zeng, W Zhang, Q Lin, Y Gao, J Teng… - Nucleic acids …, 2024‏ - academic.oup.com
To fully unlock the potential of pigs as both agricultural species for animal-based protein
food and biomedical models for human biology and disease, a comprehensive …

Telomere-to-telomere genome assembly of a male goat reveals variants associated with cashmere traits

H Wu, LY Luo, YH Zhang, CY Zhang, JH Huang… - Nature …, 2024‏ - nature.com
A complete goat (Capra hircus) reference genome enhances analyses of genetic variation,
thus providing insights into domestication and selection in goats and related species. Here …

Map** and functional characterization of structural variation in 1060 pig genomes

L Yang, H Yin, L Bai, W Yao, T Tao, Q Zhao, Y Gao… - Genome Biology, 2024‏ - Springer
Abstract Background Structural variations (SVs) have significant impacts on complex
phenotypes by rearranging large amounts of DNA sequence. Results We present a …

IAnimal: a cross-species omics knowledgebase for animals

Y Fu, H Liu, J Dou, Y Wang, Y Liao… - Nucleic acids …, 2023‏ - academic.oup.com
With the exponential growth of multi-omics data, its integration and utilization have brought
unprecedented opportunities for the interpretation of gene regulation mechanisms and the …

Dissecting selective signatures and candidate genes in grandparent lines subject to high selection pressure for broiler production and in a local Russian chicken …

MN Romanov, AV Shakhin, AS Abdelmanova… - Genes, 2024‏ - mdpi.com
Breeding improvements and quantitative trait genetics are essential to the advancement of
broiler production. The impact of artificial selection on genomic architecture and the genetic …

FishSNP: a high quality cross-species SNP database of fishes

L Zhang, H Li, M Shi, K Ren, W Zhang, Y Cheng… - Scientific Data, 2024‏ - nature.com
The progress of aquaculture heavily depends on the efficient utilization of diverse genetic
resources to enhance production efficiency and maximize profitability. Single nucleotide …

[HTML][HTML] Runs of homozygosity revealed reproductive traits of Hu sheep

Y Li, Z Chen, Y Fang, C Cao, Z Zhang, Y Pan, Q Wang - Genes, 2022‏ - mdpi.com
Hu sheep, a famous breed in the Taihu Basin, has the advantages of non-seasonal estrus,
multiple fetuses, coarse feeding tolerance, and suitability for house feeding. Runs of …