Alternative pre-mRNA splicing regulation in cancer: pathways and programs unhinged

CJ David, JL Manley - Genes & development, 2010 - genesdev.cshlp.org
Alternative splicing of mRNA precursors is a nearly ubiquitous and extremely flexible point of
gene control in humans. It provides cells with the opportunity to create protein isoforms of …

Spliceosomal UsnRNP biogenesis, structure and function

CL Will, R Lührmann - Current opinion in cell biology, 2001 - Elsevier
Significant advances have been made in elucidating the biogenesis pathway and three-
dimensional structure of the UsnRNPs, the building blocks of the spliceosome. U2 and …

A generic protein purification method for protein complex characterization and proteome exploration

G Rigaut, A Shevchenko, B Rutz, M Wilm, M Mann… - Nature …, 1999 - nature.com
We have developed a generic procedure to purify proteins expressed at their natural level
under native conditions using a novel tandem affinity purification (TAP) tag. The TAP tag …

Large-scale proteomic analysis of the human spliceosome

J Rappsilber, U Ryder, AI Lamond, M Mann - Genome research, 2002 - genome.cshlp.org
In a previous proteomic study of the human spliceosome, we identified 42 spliceosome-
associated factors, including 19 novel ones. Using enhanced mass spectrometric tools and …

Efficient, specific, and combinatorial control of endogenous exon splicing with dCasRx-RBM25

JD Li, M Taipale, BJ Blencowe - Molecular Cell, 2024 - cell.com
Efficient targeted control of splicing is a major goal of functional genomics and therapeutic
applications. Guide (g) RNA-directed, deactivated (d) Cas CRISPR enzymes fused to …

High-definition macromolecular composition of yeast RNA-processing complexes

NJ Krogan, WT Peng, G Cagney, MD Robinson, R Haw… - Molecular cell, 2004 - cell.com
A remarkably large collection of evolutionarily conserved proteins has been implicated in
processing of noncoding RNAs and biogenesis of ribonucleoproteins. To better define the …

Mass spectrometry: from genomics to proteomics

JR Yates - Trends in genetics, 2000 - cell.com
Large-scale DNA sequencing has stimulated the development of proteomics by providing a
sequence infrastructure for protein analysis. Rapid and automated protein identification can …

Allosteric cascade of spliceosome activation

DA Brow - Annual review of genetics, 2002 - annualreviews.org
▪ Abstract Introns are removed from precursor messenger RNAs in the cell nucleus by a
large ribonucleoprotein complex called the spliceosome. The spliceosome contains five …

Introns protect eukaryotic genomes from transcription-associated genetic instability

A Bonnet, AR Grosso, A Elkaoutari, E Coleno, A Presle… - Molecular cell, 2017 - cell.com
Transcription is a source of genetic instability that can notably result from the formation of
genotoxic DNA: RNA hybrids, or R-loops, between the nascent mRNA and its template. Here …

Introns and splicing elements of five diverse fungi

DM Kupfer, SD Drabenstot, KL Buchanan, H Lai… - Eukaryotic …, 2004 - Am Soc Microbiol
Genomic sequences and expressed sequence tag data for a diverse group of fungi
(Saccharomyces cerevisiae, Schizosaccharomyces pombe, Aspergillus nidulans …