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Tackling undruggable targets with designer peptidomimetics and synthetic biologics
CS Swenson, G Mandava, DM Thomas… - Chemical …, 2024 - ACS Publications
The development of potent, specific, and pharmacologically viable chemical probes and
therapeutics is a central focus of chemical biology and therapeutic development. However, a …
therapeutics is a central focus of chemical biology and therapeutic development. However, a …
BIOPEP-UWM database of bioactive peptides: Current opportunities
P Minkiewicz, A Iwaniak, M Darewicz - International journal of molecular …, 2019 - mdpi.com
The BIOPEP-UWM™ database of bioactive peptides (formerly BIOPEP) has recently
become a popular tool in the research on bioactive peptides, especially on these derived …
become a popular tool in the research on bioactive peptides, especially on these derived …
Elucidation of the role of in silico methodologies in approaches to studying bioactive peptides derived from foods
A Iwaniak, M Darewicz, D Mogut… - Journal of Functional …, 2019 - Elsevier
Since the definition of bioactive peptides has been firstly published, the knowledge about
these molecules is still being improved. It stems from the progress in research methods …
these molecules is still being improved. It stems from the progress in research methods …
PEP-FOLD3: faster de novo structure prediction for linear peptides in solution and in complex
Abstract Structure determination of linear peptides of 5–50 amino acids in aqueous solution
and interacting with proteins is a key aspect in structural biology. PEP-FOLD3 is a novel …
and interacting with proteins is a key aspect in structural biology. PEP-FOLD3 is a novel …
BitterDB: taste ligands and receptors database in 2019
Abstract BitterDB (http://bitterdb. agri. huji. ac. il) was introduced in 2012 as a central
resource for information on bitter-tasting molecules and their receptors. The information in …
resource for information on bitter-tasting molecules and their receptors. The information in …
Identification and molecular docking study of fish roe-derived peptides as potent BACE 1, AChE, and BChE inhibitors
Z Yu, H Ji, J Shen, R Kan, W Zhao, J Li, L Ding, J Liu - Food & Function, 2020 - pubs.rsc.org
Acetylcholinesterase (AChE), butyrylcholinesterase (BChE), and beta-secretase 1 (BACE 1)
play vital roles in the development and progression of Alzheimer's disease (AD). The …
play vital roles in the development and progression of Alzheimer's disease (AD). The …
Peptidomimetic inhibitors of TMPRSS2 block SARS-CoV-2 infection in cell culture
L Wettstein, PM Knaff, C Kersten, P Müller… - Communications …, 2022 - nature.com
The transmembrane serine protease 2 (TMPRSS2) primes the SARS-CoV-2 Spike (S)
protein for host cell entry and represents a promising target for COVID-19 therapy. Here we …
protein for host cell entry and represents a promising target for COVID-19 therapy. Here we …
Peptide-aware chemical language model successfully predicts membrane diffusion of cyclic peptides
Language modeling applied to biological data has significantly advanced the prediction of
membrane penetration for small-molecule drugs and natural peptides. However, accurately …
membrane penetration for small-molecule drugs and natural peptides. However, accurately …
StaPep: An Open-Source Toolkit for Structure Prediction, Feature Extraction, and Rational Design of Hydrocarbon-Stapled Peptides
Z Wang, J Wu, M Zheng, C Geng, B Zhen… - Journal of Chemical …, 2024 - ACS Publications
All-hydrocarbon stapled peptides, with their covalent side-chain constraints, provide
enhanced proteolytic stability and membrane permeability, making them superior to linear …
enhanced proteolytic stability and membrane permeability, making them superior to linear …
[HTML][HTML] A random forest model for peptide classification based on virtual docking data
H Feng, F Wang, N Li, Q Xu, G Zheng, X Sun… - International Journal of …, 2023 - mdpi.com
The affinity of peptides is a crucial factor in studying peptide–protein interactions. Despite
the development of various techniques to evaluate peptide–receptor affinity, the results may …
the development of various techniques to evaluate peptide–receptor affinity, the results may …