Modern chemical graph theory

LSG Leite, S Banerjee, Y Wei, J Elowitt… - Wiley Interdisciplinary …, 2024 - Wiley Online Library
Graph theory has a long history in chemistry. Yet as the breadth and variety of chemical data
is rapidly changing, so too do graph encoding methods and analyses that yield qualitative …

Computational methods in glaucoma research: current status and future outlook

MJ Kim, CA Martin, J Kim, MM Jablonski - Molecular aspects of medicine, 2023 - Elsevier
Advancements in computational techniques have transformed glaucoma research, providing
a deeper understanding of genetics, disease mechanisms, and potential therapeutic targets …

Carbon-based molecular properties efficiently predicted by deep learning-based quantum chemical simulation with large language models

H Wang, B Chen, H Sun, Y Zhang - Computers in Biology and Medicine, 2024 - Elsevier
The prediction of thermodynamic properties of carbon-based molecules based on their
geometrical conformation using fluctuation and density functional theories has achieved …

Time-resolved graphs of polymorphic cycles for h-bonded network identification in flexible biomolecules

Y Aboulfath, S Bougueroua, A Cimas… - Journal of Chemical …, 2024 - ACS Publications
A novel approach based on a coarse-grained representation of topological graphs is
proposed for the automatic analysis of molecular dynamics (MD) trajectories of hydrogen …

Exploiting graph theory in MD simulations for extracting chemical and physical properties of materials

S Bougueroua, AA Kolganov, C Helain… - Physical Chemistry …, 2025 - pubs.rsc.org
Some of our recent developments and applications of algorithmic graph theory for extracting
the physical and chemical properties of materials from molecular dynamics simulations are …

Unraveling Aqueous Alcohol Freezing: new theoretical tools from graph theory to extract molecular processes in MD simulations

R AbouHaidar, S Bougueroua, D Duflot… - Faraday …, 2024 - pubs.rsc.org
Ice clouds in the upper troposphere are crucial for regulating Earth's climate by affecting
stratospheric humidity and the global radiative balance. A key aspect of cloud formation is …

[HTML][HTML] Topological graphs: a review of some of our achievements and perspectives in physical chemistry and homogeneous catalysis

S Bougueroua, Y Aboulfath… - Comptes …, 2024 - comptes-rendus.academie-sciences …
This paper reviews some of our developments in algorithmic graph theory, with some
applications in physical chemistry and catalysis. Two levels of granularity in the topological …

An Effective Approach Based on the Malatya Centrality Algorithm for Determining the Maximum Independent Set and Minimum Vertex Cover in Molecular Graphs

S Yakut - 2024 8th International Artificial Intelligence and Data …, 2024 - ieeexplore.ieee.org
Molecular graphs are graphs formed by considering atoms as nodes and the connections
between these atoms as edges, which constitute the structure of chemical compounds …

An Effective and Robust Approach Based on Malatya Centrality Algorithm for Interpreting Cheminformatics Graphs Using Maximum Clique

S Yakut, F Öztemiz - Journal of Physical Chemistry and Functional …, 2024 - dergipark.org.tr
Cheminformatics graphs are derived by transforming the atomic nodes and bonds of
chemical compounds into graph structures and are used to analyze the chemical and …

Predicción de enlaces en redes biomédicas mediante redes neuronales gráficas

F Núñez Moreno - 2024 - riuma.uma.es
Las redes biomédicas modelan relaciones complejas entre entidades biológicas,
presentando desafíos para su análisis y comprensión. En un contexto en el que la …