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Principles of protein folding—a perspective from simple exact models
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …
explored in computer simulations of simple exact lattice models. These models represent …
Small-angle X-ray scattering of polymers
This review will cover small-angle X-ray scattering of polymers, especially with the use of
synchrotron radiation. By nature, small-angle X-ray scattering (SAXS) probes relatively large …
synchrotron radiation. By nature, small-angle X-ray scattering (SAXS) probes relatively large …
[KNIHA][B] A guide to Monte Carlo simulations in statistical physics
D Landau, K Binder - 2021 - books.google.com
Dealing with all aspects of Monte Carlo simulation of complex physical systems encountered
in condensed matter physics and statistical mechanics, this book provides an introduction to …
in condensed matter physics and statistical mechanics, this book provides an introduction to …
Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques
Pulse field gradient NMR methods have been used to determine the effective hydrodynamic
radii of a range of native and nonnative protein conformations. From these experimental …
radii of a range of native and nonnative protein conformations. From these experimental …
Hot regions in protein–protein interactions: the organization and contribution of structurally conserved hot spot residues
Structurally conserved residues at protein–protein interfaces correlate with the experimental
alanine-scanning hot spots. Here, we investigate the organization of these conserved …
alanine-scanning hot spots. Here, we investigate the organization of these conserved …
Role of the molten globule state in protein folding
M Arai, K Kuwajima - Advances in protein chemistry, 2000 - Elsevier
Publisher Summary This chapter deals with the structure of the molten globules of various
globular proteins revealed by the recent experimental studies. Recent advances in …
globular proteins revealed by the recent experimental studies. Recent advances in …
A test of lattice protein folding algorithms.
We report a blind test of lattice-model-based search strategies for finding global minima of
model protein chains. One of us (EIS) selected 10 compact conformations of 48-mer chains …
model protein chains. One of us (EIS) selected 10 compact conformations of 48-mer chains …
Polyproline II helical structure in protein unfolded states: lysine peptides revisited
AL Rucker, TP Creamer - Protein science, 2002 - Wiley Online Library
The left‐handed polyproline II (PPII) helix gives rise to a circular dichroism spectrum that is
remarkably similar to that of unfolded proteins. This similarity has been used as the basis for …
remarkably similar to that of unfolded proteins. This similarity has been used as the basis for …
Theoretical studies of protein folding and unfolding
M Karplus, A Šali - Current Opinion in Structural Biology, 1995 - Elsevier
The mechanism of protein folding is being investigated theoretically by the use of both
simplified and all-atom models of the polypeptide chain. Lattice heteropolymer simulations …
simplified and all-atom models of the polypeptide chain. Lattice heteropolymer simulations …
Conformational transitions of adsorbed proteins on surfaces of varying polarity
Combining a wide range of protein adsorption experiments (three globular proteins on eight
well-defined homogeneous surfaces) with Monte Carlo simulations of lattice proteins at …
well-defined homogeneous surfaces) with Monte Carlo simulations of lattice proteins at …