Principles of protein folding—a perspective from simple exact models

KA Dill, S Bromberg, K Yue, HS Chan… - Protein …, 1995 - Wiley Online Library
General principles of protein structure, stability, and folding kinetics have recently been
explored in computer simulations of simple exact lattice models. These models represent …

Small-angle X-ray scattering of polymers

B Chu, BS Hsiao - Chemical reviews, 2001 - ACS Publications
This review will cover small-angle X-ray scattering of polymers, especially with the use of
synchrotron radiation. By nature, small-angle X-ray scattering (SAXS) probes relatively large …

[KNIHA][B] A guide to Monte Carlo simulations in statistical physics

D Landau, K Binder - 2021 - books.google.com
Dealing with all aspects of Monte Carlo simulation of complex physical systems encountered
in condensed matter physics and statistical mechanics, this book provides an introduction to …

Hydrodynamic radii of native and denatured proteins measured by pulse field gradient NMR techniques

DK Wilkins, SB Grimshaw, V Receveur, CM Dobson… - Biochemistry, 1999 - ACS Publications
Pulse field gradient NMR methods have been used to determine the effective hydrodynamic
radii of a range of native and nonnative protein conformations. From these experimental …

Hot regions in protein–protein interactions: the organization and contribution of structurally conserved hot spot residues

O Keskin, B Ma, R Nussinov - Journal of molecular biology, 2005 - Elsevier
Structurally conserved residues at protein–protein interfaces correlate with the experimental
alanine-scanning hot spots. Here, we investigate the organization of these conserved …

Role of the molten globule state in protein folding

M Arai, K Kuwajima - Advances in protein chemistry, 2000 - Elsevier
Publisher Summary This chapter deals with the structure of the molten globules of various
globular proteins revealed by the recent experimental studies. Recent advances in …

A test of lattice protein folding algorithms.

K Yue, KM Fiebig, PD Thomas, HS Chan… - Proceedings of the …, 1995 - pnas.org
We report a blind test of lattice-model-based search strategies for finding global minima of
model protein chains. One of us (EIS) selected 10 compact conformations of 48-mer chains …

Polyproline II helical structure in protein unfolded states: lysine peptides revisited

AL Rucker, TP Creamer - Protein science, 2002 - Wiley Online Library
The left‐handed polyproline II (PPII) helix gives rise to a circular dichroism spectrum that is
remarkably similar to that of unfolded proteins. This similarity has been used as the basis for …

Theoretical studies of protein folding and unfolding

M Karplus, A Šali - Current Opinion in Structural Biology, 1995 - Elsevier
The mechanism of protein folding is being investigated theoretically by the use of both
simplified and all-atom models of the polypeptide chain. Lattice heteropolymer simulations …

Conformational transitions of adsorbed proteins on surfaces of varying polarity

G Anand, S Sharma, AK Dutta, SK Kumar, G Belfort - Langmuir, 2010 - ACS Publications
Combining a wide range of protein adsorption experiments (three globular proteins on eight
well-defined homogeneous surfaces) with Monte Carlo simulations of lattice proteins at …